RNA id: XM_039787503.1


Basic Information

Item Value
RNA id XM_039787503.1
length 2476
RNA type mRNA
GC content 0.54
exon number 21
gene id exoc7
representative False

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 5079945 ~ 5106487 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTAACTCGACATCAttgcatttagctagctagctatccaCAACAGTAGCTTTGGGTCATCgttgtttgtcattttaaagCCCTAAATCGACCCGTTTATCGGGTTTAATCGCCTGGTGGCCGTCCTGTGATGGGAATTACCTCCAGGATGGTTCCTACCGAGGATGCGTCCGCCAGGAAGCGGGAGATAGAGGAGAAACTGAAGCAGGAGCAAGAAACGCTGTCGTTCATCCGGGAAAACATGGAGAAGAGTGATCAGCTCACCAAGGGCATGGTCTCCATCCTGTCGTCGTTCGAGAGTCGCCTGATGCAGCTGGAGAACTCCATCATCCCCGTCCACAAACAGACGGAGAACCTGCAGCGGCTGCAGGAGAACGTGGACAAGACTCTGTCCTGCATGGATCACGTCATCAGCTACTACCACGTGGCCAAAGACACGGACCGGATCATCAGAGAGGGGCCGACAGGCAGACTGGATGAGTATCTCGCGTGCATTGCAAAGATTCAGAAAGCTGTGGAATATTTTCAAGATAACAACCCTGACAGCCCCGAGCTCAACACAGTGAAAGCGCGCTTCGAGAAGGGCAAGGAGCTGCTGGAGGCGGAGTTTCGCAGCCTCCTGACGCGCTACAGCAAACCCGTCCCGCCCATCCTCATCCTGGACGCCATCACTGTGGACGAAGAGCTGGAGGTCCAGGAGGACGTGGTGCTGGAACACCTGCCCGAAGCCGTGCTCCAAGACATCATCTGCATCGCCGGCTGGCTGGTGGAGTACGGACGCAACCAGGATTTCATGAACGTCTACTTCCAGATCCGGTCCAACCAGCTGGACCGCTCCATTAAAGGGCTGAAGGATCACTTCCGCAAGAACAGCGCCTCCTCCGGGATCCTGTACTCGCCCGCCGTCCCGACCAAACGCAAGGACACGCCCACCAAAAAGGCTCCCAAGAGACCAGTCTACATCCCAGGGACCATTCGCAAGGCTCAGAACCTTCTGAAACAGTACTCACAGCATGGGCTGGATGGGAAAAAGGGGGGCTCTAACCTCACTCCTTTGGAAGGTTACGATCATGACTTGCGGGTCAAACACCCGTCTGACGCCCTGACCGAGAAGCACGGGGCCGCCGCAGGGAAAGATGACGTTCTGGACATCGAGATCGACTCCTACATCCACTGCATCACCGCCTTCGTCAAGCTGGCCCAGAGCGAGTACGTCCTCCTGGCGGAAATCATCCCCGAGCACCACCAGAAGAAGACCTTCGACTCCCTCATCCAGGAGGCGCTGGACAACCTGATGCTGGAGGGAGACAACATCGTGTCTGCAGCTCGCAGAGCCATAATGCGTCACGACTACTCCGCTGTGCTCACCATCTTCCCCATCCTCAGACACCTGAAGATGAACAAGTCTGAGTTTGACACAACGCTGCAGGGAACAGCAGCAAGTACCAAGAACAAGCTGCCGACTCTCATCACCTCGATGGAAACTATTGGAGCCAAAGCTCTGGAGGAGTTTGCCGACAGCATCAAGAATGATCCTGATAAAGAGTACAACATGCCCAAGGATGGAACGGTCCACGAGCTGACCAGCAACGCCATCCTGTTCCTGCAGCAACTGCTGGACTTCCACGAGACAGCCGGAGCCATGCTGGCCTCACAAGAGACGAGTTCATCGGCGAGCAGCTACACCTCCGAGTTCAACAAAAGGCTCCTCAGCTCTTATATATGTAAGGTGTTGGGGAACCTGCAGCTGAACCTGCTCAGTAAATCCAAAGTGTACGAGGATTCGGCGCTGAGCGCCATTTTTCTGCacaacaactacaactacaTCCTCAAGTCGCTGGAGAAGTCCGAGTTGATCCAGCTGGTGACGGTGACTCAGAAGAAAGCGGAGAGTTCGTACAGAGAGCTGATCGAGCAGCAGATCCAGATGTACCAGCGCAGCTGGTTGAAAGTCACAGAGCACCTGACGGACAGGAACATGCCCGTCTTCCAACCCGGCACTAAGCTGAAGGACAAAGAGCGACAGGTGATTAAAGACAAATTCAAGGGCTTTAACGACGGGCTGGAGGAGTTGTGTAAGATCCAGAAGGGTTGGGCCATCCCAGACAAAGAGCAGCGAGACTTCATCCGCCAGGCTCAGAGGAGGGTGGTGTCCGATGCTTACAGGGCCTTCCTGCAAAGatGCGCCAACATCTCTTTCACCAAGAACCCGGAGAAGTATCACAAGTATCGGccggaggaggtggaggagatgATCGAAAAGCTGTTCGACACGTCGGCCTGAGCCAACCCCCCGACTCGCCTTCCTCACGCTCTCCAAACGCCACCCTTTATTCACCCTCTCCTCACACTACTGTCGCCCCCCCCCGCTGGGTCCGATGAATGCTTTTGTACAAAGATAACATCATGATGTATTTATGTAATTTAGCCGTTCCAGCTTAGCatttcaaacaaataaaagggaACTCTGTCAATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284528 lncRNA upstream 17289 5062363 ~ 5062656 (+) True G209968
TU284478 lncRNA upstream 49921 4975929 ~ 5030024 (+) True G209931
TU284479 lncRNA upstream 50154 5029327 ~ 5029791 (+) False G209931
TU284452 lncRNA upstream 175639 4904098 ~ 4904306 (+) True G209906
TU284451 lncRNA upstream 178948 4900770 ~ 4900997 (+) True G209905
TU284577 lncRNA downstream 6674 5113161 ~ 5113386 (+) True G210006
TU284597 lncRNA downstream 36128 5142615 ~ 5220624 (+) True G210020
TU284603 lncRNA downstream 85512 5191999 ~ 5192806 (+) True G210026
TU284604 lncRNA downstream 89768 5196255 ~ 5196603 (+) True G210027
TU284612 lncRNA downstream 117553 5224040 ~ 5229881 (+) True G210030
XM_039787490.1 mRNA upstream 1698 5070895 ~ 5078247 (+) True tvp23b
XM_039789083.1 mRNA upstream 12242 5051348 ~ 5067703 (+) True trim16
XM_039787167.1 mRNA upstream 36936 5027164 ~ 5043009 (+) True fads6
XM_039788425.1 mRNA upstream 58851 5008225 ~ 5021094 (+) True LOC120551198
XM_039788421.1 mRNA upstream 98527 4946970 ~ 4981418 (+) True hid1b
XM_039789233.1 mRNA downstream 13602 5120089 ~ 5123604 (+) True LOC120551710
XM_039788623.1 mRNA downstream 40125 5146612 ~ 5187662 (+) False ccr10
XM_039788625.1 mRNA downstream 72298 5178785 ~ 5187662 (+) False ccr10
XM_039788626.1 mRNA downstream 72298 5178785 ~ 5187662 (+) False ccr10
XM_039788624.1 mRNA downstream 78100 5184587 ~ 5187662 (+) False ccr10
XR_005637866.1 other upstream 1052447 3998373 ~ 4027498 (+) False LOC120551345
TU283994 other upstream 1256694 3818853 ~ 3823251 (+) True LOC120550571
TU283997 other upstream 1256694 3821899 ~ 3823251 (+) False LOC120550571
TU283964 other upstream 1432948 3646009 ~ 3646997 (+) True G209514
TU283708 other upstream 2246271 2779741 ~ 2833674 (+) False G209344
XR_005637777.1 other downstream 484849 5591336 ~ 5687896 (+) False LOC120550763
XR_005637869.1 other downstream 976948 6083435 ~ 6092738 (+) False kctd2
TU284934 other downstream 1364169 6470656 ~ 6472155 (+) True G210266
TU285573 other downstream 2951256 8057743 ~ 8062269 (+) True dydc2
XR_005637922.1 other downstream 3093078 8199565 ~ 8199679 (+) True LOC120551817

Expression Profile