RNA id: XM_039787608.1


Basic Information

Item Value
RNA id XM_039787608.1
length 4020
RNA type mRNA
GC content 0.53
exon number 16
gene id LOC120550774
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 1594481 ~ 1616080 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGACGTCTCAATATGGCGCCTCTCCGCCCCGAGCACACCTGTCACCGCCGCAGAGGATGATTCAGCGGTGTCTCCGCCGTCTCTCCGCCGGCCAGAGGGCTCTGTTTTCGGGCATGACGCTCCGCGGGACTCCGCTGTCTGTTCCCCGCGGAGGAGGCGCCGCGGCCGGGTCCGTTTCTGCCGAGCAGCGCTGACAGGAGATCCGCAGAGtaaacGACAGGAAGTGGAGTGAAATGGACAGAAGCAAAGATGCGTCCTGTTCCCCGGCGACCGTAAACAACGGCGCCGAGGATCTCGCCGCCTGTTCTTCGCTCTGCCCCGGGTCAGATCACGGACCAATCGGACGCTTCTGCGAGGAtcagggggcggggcttagccCGAGAGAAGACgacgaggacgaggaggaggaggcacgAACTGACGTGATTGGTTCAGACGTGGCGGCGCAGCGTTGgtctgaggaagaggaaggtgatgaTGACGCCTTCACGGGCGGCGGCGCTCGCCATAGGAACACGTTTGCGTGCCGGCGGCGCCGGCAGAGCGCCCCGGGAGACCTACAGCCTGacgaaccagaaccagaaccagaaccagaaccagacccAGAGTCAGAGCTGCAGTCCAGGAGGCCAGACATCGCCGAATACTTCAGCTGcaGGAAGCAGCGGTGCGTCAGTCAAAGTGTTCCTGGTTGGAAGCTGTTTGGTAAGGTTCCTCCCAAACAGAGCCCGTCCAAACAGCCTCGCATCATCCAGCAGGAGTTCGAGGCGCGTCAGGTGGCGGCCCGCTGCTCTCCTACCCATAATGCAGTGGGGCAGCAGAGCCGGAGGAAGGCGGAGCCGCTGTCGACCACGGCGCTGATTCTGCAGGACCGGCCGCCGGACCTTCCAGCTAAGTCTGCTGAGGAGACTCAGAGACACCGGCAGCAGTACGAGCAGATGGTGGCCGCCGCCAAGAGGAGAGAGCTCGCGGCGGCCGAGCGGAGGCAGCAGCAGATGACTCAGCGCTTCAGACAGGAAGTGGAGATCTCCAACGCCACGCTGGTCTGGAACCAGCACATCCTGCCGCACTGGGACGCCATgcGGGACAGTCGGCGAGCGCGGGACCTGTGGTGGGGGGGTTTACCGCCGAGCGTGCGAGGACGAGTCTGGAGCCTCGCCATCGCCAACGAGCTCAACATCAccgcagaGCTGTATGAGATCTTCCTCTCCAGAGCCAAGGAGAAGTGGACTAACCTCAGCGACACCGACGCATGTTTCCCTTCAGATGGAGCCTCGCTGGCCGACAGTCTGGAGGTCATCGCTCGGGACATTTCCGGGGTACTGCCGTCTCTCGGCGTCTTCCAGAAGggaGGTCCTTACCACGACCTGCTGCAAAGCATTCTGGGAGCTTACATCTGCTACAGACCTGATGTGGGATATGTCCAGGGTATGTCCAGCGTGGCGGCCATGTTGATCCTGAACATGGATGAAGTCGACGTCTTCATCAGCTTCTCCAACCTAATCAACAGACGCTGTCAGTTGGCTTTCTACCGAGGACAACACCAGCTGGTACTCTGCTCTCTCTTACTACTATCTCAACCTTTCTACAGAGGACAGCACCAGCTGGTACTCTGCTCTCTCTTACTACTATCTCAACCTTTCTACAGAGGACAGCATCAGCTGGTACTCTGCTCTCTCTTACTACTGTCTCAACCTTTCTACCGAGGACAACACCAGCTGGTACTCTGCTCTCTCTTACTACTATCTCAACCTTTCTACAGAGGACAGCACCAGCTGGTACTCTGCTCTCTCTTACTACTGTCTCAACCTTTCTACAGAGGACAGCACCAGCTGGTACTCTGCTCTCTCTTACTACTATCTCAACCTTTCTACAGAGGACAGCATCAGCTGGTACTCTGCTCTCTCTTACTACTATATCAACCTTTCTACAGAGGACAGCATCAGCTGGTACTCTGCTCTCTCTTACTACTATCTCAATGTTTATACAGAGGACAGCACCAGCTGGTACTCTGCTCTCTCTTACTACTGTCTCAACCTTTCTACCGAGGACAGCACCAGCTGGTACTCTGCTCTCTCTTACTACTGTCTCAACCTTTCTACCGAGGACAGCACCAGCTGGTACTCTGCTCTCTCTTACTACTGTCTCAACCTTTCTACCGAGGACAGCACCAGCTGGTACTCTGCTCTCTCTTACTACTATCTCAACCTTTCTACCGAGTACAACACCAGCTGGTACTCTGCTCTCTCTTACTACTATCTCAACCTTTCTACAGAGGACAGCACCAGCTGGTACTCTGCTCTCTCTTACTACTATCTCAACCTTTCTACAGAGGACAGCACCAGCTGGTACTCTGCTCTCTCTTACTACTATCTCAACCTTTCTACCGAGGACAACACCAGCTGGTACTCTGCTCTCTCTTACTACTATCTCAACCTTTATACAGAGGACAGCACCAGCTGGTACTCTGCTCTCTCTTACTACTATCTCAACCTTTCTACAGAGGACAACACCAGCTGGTACTCTGCTCTCTCTTACTACTATCTCAACCTTTATACAGAGGACAACACCAGCTGGTACTCTGCTCTCTCTTACTACTATCTCAACCTTTCTACCGAGGACAACACCAGCTGGTACTCTGCTCTCTCTTACTACTATCTCAACCTTTCTACAGAGGACAACACCAGCTGGTACTCTGCTCTCTCTTACTACTGTCTCAACCTTTCTACCGAGGACAGCACCAGCTGGTACTCTGCTCTCTCTTACTACTATATCAACCTTTCTACAGAGGACAGCACCAGCTGGTACTCTGCTCTCTCTTACTACTGTCTCAACCTTTCTACCGAGGACAACACCAGCTGatgCTCAGGTATTTCGGGGCCTTCCAGGTGTTTCTGCAGGAGTCTCTTCCTCGTCTCTTTCTTCATTTCCAGTCTTCAGGTGTCACTCCGGACCTCTACCTGCTGGACTGGATCCTGTCCCTCTACCTGAAGCCCCTCCCCCTGGAAGTGGCGTGCAGAGTCTGGGACCTTTTCTTCCGGGATGGCGAGGAGTTCCTGTTCAGGACGGCTCTGGGGATCCTGAAGCTGCATCAGGACGTCCTGCTGCACATGGACCTCATCAGCACCGCTCAGTTCCTGTCCCGCCCCCCTGATGAGGAGCTGCTCTCTGATAGGCTGTTCTCCTGCATCTCGGCCACGCCCATGCTGAGCGGGAACAGGACCTGGAGTCAGGTCTTTTCTTCGTGGAGCGACTCGGAGACGAACAGCTGATCTGaagtcagttttatttattagtgTGTGGTtgaagtagagctgggcgataagGAGAAAATCAGGTACcccgatattcttgaccaaatacttcgATATTgtgacgatattgtagggttgacagttGGTACTTTCACAAAATACTTTTTGCAATGAGactttagataaataatctGTGTATAGAGATTGTTTTCCAGCGATATACtgaatataaatactgtgatgttaaaacaaatctgcaacTGTTCAAATGATATTCACTCAAAAACTGATTTTGTAAGAAAATTGAGTTAGTATGTGCTTGGTTTTATCAATTCAGACAACGCTATTGTATATCACGATGTCTTGATATGTGATTTCATCGCCATATGTTTCCATTTAATTATGGCCCAGCCCTATGTTGAAGCTTAGTTCGCCTGTTTGTGTGAAaggagtcaaacctctctgaactgtcccttttatttattatttttggggcttttccacctttaatggacaggacaagtgagaaaggggagagcgagagagagggagggagggagggagggggggagacatgcaggaaatcatcacaggttggagtctaaccctggacctctgcatcaagGCATAGACCTCGTAATATAGGCTATGTGCggctgctctacccactgagccaacccggccaccaaactgtccctttaagaacCAGAAACAtctccccttcctccctccctccatccctcccttcctttctccctccctcct

Function

GO: NA

KEGG:

id description
ko04721 Synaptic vesicle cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637780.1 lncRNA upstream 17143 1576129 ~ 1577338 (+) False LOC120550772
TU283098 lncRNA upstream 44354 1548773 ~ 1550127 (+) True G208917
XR_005637781.1 lncRNA upstream 64662 1507341 ~ 1529819 (+) True LOC120550773
TU283094 lncRNA upstream 102450 1491690 ~ 1492031 (+) True G208914
TU282871 lncRNA upstream 161329 1430509 ~ 1433152 (+) True G208777
TU283088 lncRNA downstream 4654 1620734 ~ 1638458 (+) True G208908
TU283084 lncRNA downstream 18760 1634840 ~ 1636085 (+) False noc3l
TU283087 lncRNA downstream 62646 1678726 ~ 1698148 (+) True G208907
TU283112 lncRNA downstream 141600 1757680 ~ 1764788 (+) True G208930
TU283113 lncRNA downstream 145209 1761289 ~ 1762182 (+) True G208931
XM_039787607.1 mRNA upstream 1737 1553857 ~ 1592744 (+) True LOC120550771
XM_039788851.1 mRNA upstream 96814 1490162 ~ 1497667 (+) True LOC120551417
XM_039788841.1 mRNA upstream 129874 1461274 ~ 1464607 (+) True LOC120551412
XM_039788839.1 mRNA upstream 156896 1430472 ~ 1437585 (+) True LOC120551410
XM_039788840.1 mRNA upstream 156896 1430472 ~ 1437585 (+) False LOC120551410
XM_039789059.1 mRNA downstream 642 1616722 ~ 1636135 (+) True noc3l
XM_039789261.1 mRNA downstream 32355 1648435 ~ 1663464 (+) True rpp30
XM_039789061.1 mRNA downstream 376897 1992977 ~ 2006545 (+) True LOC120551573
XM_039789062.1 mRNA downstream 661820 2277900 ~ 2298804 (+) True LOC120551574
XM_039788394.1 mRNA downstream 686211 2302291 ~ 2312449 (+) True LOC120551177
TU283086 other upstream 17111 1498447 ~ 1577370 (+) True LOC120550772
TU283091 other upstream 22644 1466018 ~ 1571837 (+) True G208911
TU282870 other upstream 101300 1430509 ~ 1493181 (+) False G208777
TU283035 other upstream 389233 1204590 ~ 1205248 (+) True G208867
TU283000 other upstream 500884 1090547 ~ 1093597 (+) True G208852
TU283626 other downstream 716098 2332178 ~ 2334285 (+) True G209284
TU283630 other downstream 728201 2344281 ~ 2360302 (+) False LOC120551576
TU283706 other downstream 1099565 2715645 ~ 2797135 (+) True G209344
TU283708 other downstream 1163661 2779741 ~ 2833674 (+) False G209344
TU283964 other downstream 2029929 3646009 ~ 3646997 (+) True G209514