RNA id: XM_039787780.1


Basic Information

Item Value
RNA id XM_039787780.1
length 4168
RNA type mRNA
GC content 0.48
exon number 24
gene id osbpl7
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 6632297 ~ 6649790 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttattttgatatttatCACAAATTATGTGAGCTGCAGATGTGGCACCATTTACAAGCTATTGGTATCATGGTAAATAAAGGTCAAATTGTAACCTGCACTGATTGATCGACAAATATGAACCCATATCAacaaatattgatgtttttcagATAATTATTAACGCACATAAAACCATACTTTTCCCTTAAAATACCATTATTTTCTAAATCAAGCCACTTCTAGTATGTTAAGGCCATATTTAAGATCCCACCCTTTGCTTTAAAACAGAGTAACCTAGGTGTGCAGAGTGAGTGGAGGTTGTCTAGATTTAGGCTACCCTCCACTACATCCCTGCTAGTAGCTGTGTAATTCCAGCTAATGCGGATAATGCCCAGGACGCATTGCGCACGGCGCGCGCAGCCTGCGACGCACAGCTCTCCTTTGATTTGAGGGAGCTCGTAGAGAGGGAGACGGCCGTTTCTCCAACACCCAATGAGACACCTGTTGGATGTATCGGGCGCAGACGATCGCAACAGATGATGAGAGTCGGAGGTGAATTTCAGCTGATCACAACAGGGAGGGGAGTCTGAGGTCCGCGCTTTGAAATGGAATCATACGGATCTTCACTCAACCGCAGCCAGTCGCTGGCGAGCGGCCTGGAGAAGTCTTCACCAACGTGGAAGCCATCCCGCTCTCGCAGCAGTAGCACTGTGTCATCCCGCCACTCCAGACAGATTATCAAAGACTGGGAAGTGATTGACGACCTTCAGGTAGAAATGCACGCAGGAGGCGATAACCCTCCCGACATGACCACCCCGGGTATCTGTGAAGGATATCTCCTCAAGAGGAGGAAGTGGCCACTGAAAGGTTGGCACAAGCGATACTTTGTCTTGGAAGCAGGGAACTTGCGTTACTCCAAAAATCAACAAGATGTGTCCAGGGGAAGATTCCAGGGCTCTTTAGATGTCAGCCACGCAGTAATGTCGATAAACAAGAAGTCAAATCAGATTGACTTGGATGCAGGGGACATTCTCTATCACATAAAGGCAAAGAGCCATGAACTCTTCTACATTTGGGTAACCAAGCTACAAGCCCACCGCCTGTACAAGAAGCATGAGGCTACTCATGTTCACAGCAGCTTCCTCCGGACTTTGTCCCATGGCAGTGCAGCCGGACAAGCTCAGATAAATGGAGATTTGAGCTCTGCAGGCATGGTGGATTCAGCTGGAGCACCAGCAGGAGTGCTGCCCTCAGATAACAACGCTGTGAACAGAAAAGTGTCGGCCTGGCTGCAGCAAAGTCACAACCCAGACTCCTGTGTTCAAGAGCTGAACCGTTGTCATTTGGACCTTACTGAGCTAAACCGCTTAATCCAGAAGCTGCAGATGTTGGAGGGGGGCCAGGCTTTCACTAATGGAGACCTGAAGCGCATCATCAGCATACAGAATATCTCGCTTGAGAAGCCGAAGAAGTCGAGGTCAGGGAAGATGTGGAGCCACTCTCGCACATTATCCCTGGGAATGGTAAGAAAGCCTATTCGTGGGATTACTAAATCGCTGTCCTCCAGTCACCTGGGCAGCTCGCCTCACCTCGGTGCATCAGTCCCCTCTATCCCAGACTACGTCTACTCACAGCTGTCCCCTCCTACTGCCACATCGCCCGAGGGCAAGAAAATCCAGCAGGACATTTGCGCCATATCGCTACGAGTGCTTGCTTCGCTGAAGACAGTGCATGAAACTCTGTCCCAGGAGAGGCAGAAGCTGCAGGAAGTCTGGGAAACTAACAACATCCACCAGTCTAAAACTGCTGAGCCTGCAGCAGCGAGGCATTCATCCCACGGGCCTCCTTCAGTAGCAGATTCAGCTGCAGAGTATTTTGACGCCAGTGACATCCTTTGTGGTAGTTCCTCTGAGGTGTCTGATGAGTCAGGACTAAGTGATGGAAGCACCACCAACTCTGAGCCAGAGGAAGGACATGCGTCGGCCACCCGGAAATACCGTGCTAGCATTTCCAAGACTCCTAACAGCTTTGTTCCCAAGAGCACCGGCCGGCGAACGACACTGCCTGCTCACTGTCCTGACAACAGCCACGTGGGCCTCATGGCTATCCTCTACAATAACATAGGTAAAGACTTGGCTCGAGTGTCCATGCCTGCTGCTCTCAATGAACCCGTTAACCTGCTGCAGAGGCTGTGTGAAGAGCTGGAGTACAGTGAGCTGCTGGATATCGCCAGCAACACATCGGACCCCTACCAGAGGATGGTTTACATTGCTGCCTTCGCTATCTCTAGTTACTCCCCTGTGACATTCAGAAACCGCTACAAGCCCTTTAATCCGGTGCTGGGAGAGACCTACGAGTGCATCAGAGAGGACCGGGGCTTCCGCCTCATCAGTGAGCAGGTCTGCCACCATCCCCCCATCTCTGCCTGCCATGCACAGTCAGAGAACTTCTCCTTTTGGCAAGACCAGCGATGGAAAAATAAATTCTGGGGGAAGTCACTGGAGATTCTGCCAACAGGAATGGTGAATGTCACTCTTCCAAGGTACGGTGACCACTATGAGTGGAACAAAGTAGTGACCTGTATCCACAACGTCCTCAGTCAACAGCGCTATCTGGAGCATTACGGAGAGGTCACCATCCGTAACCTCAACAGCAACGTCTGCACCTGCAAGATTACCTTCGTCAAGTCCCGTTATTGGGGTTCAGACACAAACAAGAATGAAGTGCAGGGCACGGTGCTGGACCAAAGTGGGAGTGTCATTCACCGGTTCGGAGGTCTGTGGCACGAAGGCATCTACTGTGACACCCTGCCCACTCCGAAATGTGTCTGGAAGCCAAATCCCCAGCCAAAGGATCATATGCTGTACTATGGCTTCTCCACCTTCGCCATGGAGCTAAATGAACTCCCTCCCGACCTgaagcctctccttcctcctacAGACAGCCGTCTGCGCCCAGACCAAAGGTTGCTGGAGGATGGAAAGGTGGATGAAGCAGACATAAAGAAAGATGAGATAGAGGAGTTTCATAGGGAGCGGAGAAAAGAGCTCTCCAAAATGGGGGAAGAGCATGTTCCACGTTTTTTCAAAAAAGCCAAAGATTCCTGTGGACGGGACGTGTGGTTGACAAACGGGACGTACTGGAAGCTCAGAGAGAATCCAGGTTTTgctaatattaaaaataaaaacctaacTGTCTGGTGATGAGACGACAGCAACgcgacagacaaaaacacatgtgagagagagagagagcgagagagaaataTCAGCGGTGGATAAACGGCTCTGAGAAACGTGCAGAGTGGAGATGATGCTGCTGGTCTCTCTTCTCGTTCCTTCTGTTGGCCCATGACTGGTTCATGGGAACCCTCAGCACCTGTAGTCTCATCAGACCAGTCAGCATCCAGCACAGGTGAAGAAACAGAAAGAACTTTTCTCATCACGATCAATTTTATAATGcattttatcattattttttttttagactacTTCAGTCaactcatatacagtatatgtttatatttttgagaatttcacagttttttgcAGAAAAGACTGAATGTGCGACGCACACTCTGCATTAACATGAACAGTCAGGCTAGTAACAGGCCTAATTTGTTAGTTTATTAAttgtaaacatttattaaaagcATGCCCTCCTTCTCGGTCAGTTTACTTAACATTTTATGATGGGTGTTTGATCTTCTGAAGTTAATGCTACAGTTAGGGCTGGATTACCAACTGAGCAAAGCGGGCAACAGCCACAGCGTCCCAGATAAGGGGGCCAGTGGGTAATTGTGGtaatttgatttatttgatTATTAATTTACTAACATGATTCTTGCAATTTTTGTGTGGGATCTTCATGGTTGAATGCTGTGATGTATTACAAATTGGTTTGCGAATATGCTCCACTGAAGCACAATAAAGATAAGAACCTTAAATCTACAGTTAATTATCACCAGAATCTGCAGCCTCCCTCAGCATCACTGAGCTTTAAagtgagtttcagctcattgtttatcTGTCCggccacaactttactgttttagtTCACCCTAACCCGTCAGATAGCGTCGTTTCCAGAGAAAAAAACTCCGTACACTATctgctcagcagcaaacagcagacacagttagagaccAGCTGGTGAACAAAGTGGAGCATTTGTGCAGATAAAGAGAcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285144 lncRNA upstream 35516 6595269 ~ 6596781 (+) True G210431
TU284922 lncRNA upstream 147882 6447411 ~ 6484415 (+) True G210256
TU284899 lncRNA upstream 239724 6392137 ~ 6392573 (+) False stx4
TU284874 lncRNA upstream 362475 6268636 ~ 6269822 (+) False LOC120551157
TU284805 lncRNA upstream 373368 6257967 ~ 6258929 (+) False LOC120551158
TU285167 lncRNA downstream 6739 6656529 ~ 6657157 (+) True G210444
TU285168 lncRNA downstream 9673 6659463 ~ 6662634 (+) True LOC120550868
XR_005637796.1 lncRNA downstream 9789 6659579 ~ 6662485 (+) False LOC120550868
TU285174 lncRNA downstream 70447 6720237 ~ 6812972 (+) False G210449
TU285173 lncRNA downstream 142691 6792481 ~ 6812972 (+) True G210449
XM_039787783.1 mRNA upstream 354 6627718 ~ 6631943 (+) True mrpl10
XM_039789397.1 mRNA upstream 10266 6615723 ~ 6622031 (+) True prr15lb
XM_039787854.1 mRNA upstream 34600 6588659 ~ 6597697 (+) True cbx1b
XM_039787855.1 mRNA upstream 34600 6588764 ~ 6597697 (+) False cbx1b
XM_039787856.1 mRNA upstream 34600 6588801 ~ 6597697 (+) False cbx1b
XM_039787940.1 mRNA downstream 152877 6802667 ~ 6811429 (+) True pdk2a
XM_039788246.1 mRNA downstream 169368 6819158 ~ 6936809 (+) True myo1d
XM_039788992.1 mRNA downstream 301277 6951067 ~ 6960076 (+) True psmd11b
XM_039788993.1 mRNA downstream 301277 6951067 ~ 6960076 (+) False psmd11b
XM_039788633.1 mRNA downstream 311449 6961239 ~ 6993088 (+) True LOC120551313
TU284934 other upstream 160142 6470656 ~ 6472155 (+) True G210266
XR_005637869.1 other upstream 539559 6083435 ~ 6092738 (+) False kctd2
XR_005637777.1 other upstream 944401 5591336 ~ 5687896 (+) False LOC120550763
XR_005637866.1 other upstream 2604799 3998373 ~ 4027498 (+) False LOC120551345
TU283997 other upstream 2809046 3821899 ~ 3823251 (+) False LOC120550571
TU285573 other downstream 1407953 8057743 ~ 8062269 (+) True dydc2
XR_005637922.1 other downstream 1549775 8199565 ~ 8199679 (+) True LOC120551817
unassigned_transcript_1162 other downstream 1951388 8601178 ~ 8601248 (+) True trnag-ccc_1
XR_005637919.1 other downstream 2392856 9042646 ~ 9046468 (+) False LOC120551795
TU285955 other downstream 2923325 9573115 ~ 9576418 (+) True rpl38

Expression Profile