RNA id: XR_005637797.1


Basic Information

Item Value
RNA id XR_005637797.1
length 10293
RNA type transcript
GC content 0.44
exon number 5
gene id LOC120550876
representative False

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 11363355 ~ 11400578 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacgcagatgcACACACGCAGAAAAGAGTAGAAAGCCAGAGAGGAGAACTGCGGCGGCACGATGGGGATATTCTGCCTGCATGGTCTCTGTCGCTAAGGCGTCCGGAGTtcagccactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcctgtgtgagtgtgtgcatgcatgtgtgagtgagtgtgagccCCTGCCGACGCCGTGTGGAGAAAGGAAAGGGGAACAGAGGAGAGCGGgtggagaggaggaaaagagagggggAGTGTTGACTCTGACTGGGGCTTAGAGGAACCTCACGCCACTGGATCAGAGGACGCCGATGTGCAACAACTACCCCAACTACTGCCGCTGCTAGTCTGCCTGCGTGCCGCTGCCAGCCTGTCCTGTTAACTTCTGCCATGGCATAGCCTCCTCTTCCAGCTCGCCTCTAATCCACTAAGGAAAAGGGCATGCATGGGCACAACCAGGGATCTAGGCTAACGCATCCTTTACGTCAGTAATTCACAGTCTGAGGAAACATGGTGAGCAAGGAGGGTGGCAAATGCATGCTCACCAACTCAGAGTCTGACTCGGAGGCAGCGCCCTTGCCCTCCACCTCACTGGCACTGGAGGTGAAGTATTCCCTGGAAGCCAGTCGACAGGTGAGGAAGAGAAACAAGGCCCTGCAAGTGCGTTTCAAGGATATCTGTGAGGCACAGAACGAGCAAAGGGAGGCGGAGTTGCAGGCAGCGCGGAAAGGTGGCAAGCCGATCTCATACAAAGTAGCGTACCGCAAGTACATGACCGTCCCTGCCCGCAGATCCATCCCAAATGTCACAAGGAGCACAGGTGTGCAGACTTCCCCTGACCTGAAGAAACGCTATCAGACCTTTCCATTTGAGCGCAAGAAAGGCCACACCTTTAAACACGTGGCGGCCGTGGAAACTTATAAAGGTCAGAATAACGGTTTTGTCATGGAAGTGAAGCAGTCCAAGGCTGCTGAGCAGGGTttagatgaggaggaggaggaggaggagggagcctGCAGGGGGAGTGGAGTCCGGAGGACCAGGGCTCTGCTCCATACTAATGAGTGCATTGCCACAGTGGAGCAGCACAGTGCACCTGATGGCCTGTGCTCTGACGCTCTGCTGCTTAGTTGCTCTGCAGACACAGACTGCcttgcagacacacagagaggaagcGGAGCTGGAGCACAGGCAGAGTACCAGCTCTGCAGTGTCCCATCCAAAGCCAGGACAGGATTACAACACAGGGAGCCTGATACAGACCGCTCGGCCAAGAGGCAGCTGCTCAATCTGGAGGAGGGCTCGTCCCGAACCCTGCCGGACAGGGCCTCCAAGGTTACGGGCCCCATCTCCTGGAACTCCCTTACACAGGTGGAGTGCCTGGACAGTCCGTCTGTGCGGAGCAAGCGGAAGAAAGCCCTGCAGCTCAACGGGCTGCAGAGTGAGACGCTACCCCGTTCCAGCAGAGGCTGTACAACGCAGGCACAGTGCCACACTGGACAGTTATCTGCCCGGCCTCTACGGGGCATGGAGGAGCCTCTAACACCATGCAGAGGCAGTGAGGCTGGTGGGGCACCGCCTGACCAAACACAGGAGGCCTGCAAGCAAATAGTGCCTATGAATCAGGACGGGGATGTTAAAGCACAGCTCCAGGCCATGGAAAATCTCATCAGCTCCAGCCAAGAGACCATCAAGGTGCTGCTGGGGGTCATCCAGGAACTGGAGAAGGGGGAGGCCCACAGAGAAGGACTCTCCTATCGGACCGGACAGGACACGGCCAACTGCGACACATGCCGGAACAGTGCGTGCATTATTTACAGTGTGGAGCTTGACTTCAAGCAGCAGGAGGACAAGCTGCAGCCGCTGATGATGAGGCTTTGCCCTACGGAGGACGGCCACTTTGCCTCCCTGCCTTACCCCCAGGAGGCCTTCACATCCACCCCAAAACGCAAGTCCAAAGCGGACTCCAAGAAGCATGCTCGCTGGAAACTTTGGTTCCTGTGAAAACACAGAGGACCGTCTCCCCACTACTGATGCACAGGATTTATGTTTCCGGATGGTCGTCCATTTTAGTTTGGTTTATTCATCATCTTCTGTTTTATCACATCTCCTTGGCTTTTTGCAGACCTGGTAACCAGTATTAATGGAGAGCTCCACCACTGGATACTGAGCCCCTTCTCAGAGATGACAGGATGTGTAATGGGACACAAGTGTGGATTCCATGGAAAATTCAAAATGTCATGCTTACCAAAAATGGATTCAGAGTTATTTTGAACTAATTTCTTCAAACAGGGTGTGAAATTACACCAGGGCAACATATTTGGAGATCAGCAAGCCTCCAGGTGAGGTTGGCAATTCACCCACGATGCTCTGAGGTCTACTACATCGACAGCATATCACCGTACTGCAAAGCACAATTAACACTGTTCAGGATACATTTTCTCCAGAGGAATTAAAAAGAACTATTTTGAGTAATAACTCACACATGTAGATCACCTACTGACCATGACTGATTGAAGACGTTCATAACATCTAAAGAAGAGACTTAAAGGACAAAGAAGTCAGAGATGTTTATTGGAGTTCTATGATCAACTTTCTATCCATCTCTAAAATTCTCCTTGAATCAACTGACTTTGAAGTaaagaatgaataaataacacttatTTTCTTAATAACAATTGCAAAGTTAGATGTCAATGTAATTTTTTCTATctaaatatatatctatatacattCACTTTAAGGTTTAGTGGGATATATTCATTTGAGCTGCAGTGACGGGGGctgtgcatttaaaaaaaactacagtgcatAGGAGGAACATTTCTGATTCTTAATTCCTCTTTATACATTAAACTTAGTTCTTACTAACCTCACAGTGCACATGGTCATTGAAACCCAATACTCTAAAGTAAGTCTAGGCAATCAAACTTCATCAGTATAAAACTATAGAGAGTTCTGGCTCAACACAGAAAACTACGTTTAAAGATACTTTGTTTCAGTCACGAAACCAagtataataaataattgttggtTCTTAGCACATGTGAGCGGTAACAGAAGATAGCTGTGATTGTATTGCTGCAGTATCCTGCATCAGCTACTTCATTAGCTACTGAAACCAAGCCAGAAAGACTGAATGTGCCACTTCTGATCACAACCAGGGCTTCTACAGTGCAGGGTGACAGGCGTGTAGCCTTGCATGCTTTTTACAACAATCGGATTTTGCAGGATATTTTCTAGCttttaaaagaaacatttttaaagagaatgacaaaaaaagtttgGTTTGCTTTTTCCCCTCACCCTTTGTTTTATTACTAGCTCCTGCTCATCGCTTCCCATCTATTCAACTGTAAAGTAAAAACTCATGTAGTAGCTCTATTCAGGGTTCAGAGACTATGTACAGCCAAAATAATATTTGCATttactatatataaatatatattgtatagCATCAAATAGGGCTGATACCATTTTAATGAGTGGGAAAGCAGCCAGAatctaaaaagaaaacattacgTTAACAGCGCCTGCAGAGGCATGGAACCGAAGTCACTCTGAAACCCCAAAACACTGCCGCAAAAGACAGGAAATGCGCCAAAGTGGTTTCAAGGGCATAAAAGAAGCATCTTTATCTACTGTCACAACAATACCTTGCAAACTACAAGACATCACTGGTTTGACCTTCACAAGCTCtaacatgctgcttcctgttggCTACATGTGACTCACACCTCCACTCTTGTACATGCAGAGTAGGTTTCTTTCCGTAGTTGCTGTAGCATCAAGAGAGAAACAGTTGTTTATCTGTACCTTAATGAAGTGCAATTGATTTAATATGTGCAATACTGTGTATTTTatactgttatttttttttaaaagaagaaaatatgaaaaataaaaacagacatctACGGAGCTCTCAAAGTCTAGAGAAGACATCATTTGCGTAGCAAAGTGAGTTGTATAGTAGGTTGTTATTTTCATCAAGGCAAATACCAGTTAAAGGGTCGGctcacccaaattacaaaaaaaatatattttctcagGTATCTCTGATGGTATCAAGCAGTTAAAAATTACATTTGTTAAGGATTGTGAGGTCTGAATTATCAAGTTTCTGTTAAGATAGGCTTGCTTTTGAAATTTATAAATGTTATTATTTTCAATGCTGTGAGCACCACGAGTGGAATGTCATTCACCTCAAATTGCAATGATGTGTTAGCAGAAATCTCAAGAGACAAATATCTCAACATTTGGGcaaacaaaactaaaactaTATGCAGTGATAAACACTACTATGTGAGGAAATATGTTATTTTGTGAACCAACCCTGTAATTAAGGATTTCACTTAGGCTTAGTTTGAAAATTCTGTATGCAAAACAATCAACTCTACAATCTTATGGGATGAAAAGCGGGAAATAAGGCTGAAAATGCACCTAAAATCAGGCTTGCAGTTCTTTGATGTAGTGGGGCGGCACAACACGAGAGCAGAATAAAACAGAGGGATAAGCAGCAAAGGGCTTCTGGTGCACACTGCCTTAAAACCTATGTGTGCTTGCATGCAACTGCCTGATGTTGCCGCAGACCAGCAATGAGGTGAAACCATGAGGTAAACTGGGGACAAAGCTCTGAGTAAATGCCCCAGATATCGGAGTCACCCTCACAAGGATGCATAAAGCTGCAAGAACCAATGTTGCTCAATGGCAACATTGCCTGCTTGCctgcctgcccccccccccacccctcatcTGTAGCAGGGCCATCTCCACAGGACTTCCCCCGGGTGGATGTTTACAGCAGAGTGCTAAGGGTACAAACAAGACAACCAGTGCAGCTTCACGTCTGACACTCTTACACCTTTTAACCGCAGTCCTCTGTGGTTTGACAGTGGTGAGCATCCCCACGTGAGTCCCAGTGGTTTCCACACAGCGTTGACAGAGAGCACACGTATGACATGAGTTGTCACAGGGTCAATACACCCAGGAGGACGCTCAGTCAAAGTTTCagcacaggagaggagaggtgcAGCGAGTGAGTGATAAGTGCACATTTGAGGCATTATGATGCAGTGCCATATCTCACTATGCTTCTTTTCTGTAAGAGCTCTGCAGCAGTCTGgccagcaggagagagagacggatacggagagaagacagagagagagaagcaaggAGATACTCAGAGAAATATTTGGACAGAAAGCAATATAAAGACAGAGATAAAGAGAGTGAGTGATACAGAGAGCCATAGATACAGGGAGGATTCGGATCTGAATAGACGTCATTGAGAAGGCTTTGTTGCAGTATATTCGGTCAGTGAGTACATTCGGCAAAGAACGAGCTTCAGTCCCTATTAGCCGGTCAGCTCCATACTGTCAATAAATAGCACAAGTCCTTCCCCTGTAGCTTTCCACTCCATTCCCTCTGCACACTGCAGGAAAATCGGCAGGATGACGACGAAGCACTGCAGCCAACTATCACCACAACCTGTTGTGAGTTAGTCCTCAAACCTACAACTATGAAAAGTTGAATAGACaacattaaagttaagcttaCAATGTTTCCAATATATCCTCAGGTCTGTTAGGTAAACCATAGAAATCATTTGAGGTGTTTTCTGACAATGCATAACAAAATATGCAATGGTCAGTATTGCTAGTAtgacagacaaagaaaaacaaaggttTGTTTCATTGATTTGGTTGGAACTTTAAAAGCAGAAGACAAGTGTGTAACACAGCGATTTTTCTAGATGGAGCTTCCTACCCATGTGTATCTGCAAGGATTAAGCTTAAAACTAGAGGGAAAATGTAATTCAAGGGCATAAAGGTAGAACTGACAGCAGGGACAGCCTAAATGTTTCTGCTACCATTCGAATATAAATGTACGTAAGGGCTCATCTCAACCTGTGCGAGTGTGGACATGAATATAAAAGATACAGCCCGCTGGGATGTCCAATGATGCAAATGTGCAGCGATGCTGTGTAAGTCGCTAACGGGCATAGCACTGCAGtgacaacacacaacaaaactgaCGCCCCCAAGCCGTCACTGTGATCATTCTCATCAACATTCCATGTCCACCACCTCcatgagagaggaagaaaagagaagagagagaggagggagacagagtaGAAGATTAATGCATAAATCTAAATGTAAGAGGCTGCCACTCAGAAGAACAATGTCGGCGGTTGGCTGCAGTGTTGTGTGAGCAGCAGCGCACAATCTGCCTGCAGAGCAGGCAGCAAtgcccagcagcagcaacaacagcccTCTGATTAGAAAACTACGACCCTTCCAGCAGCGCTAACTAGGTCTCATAGCTGTTAAGAAATCACACCAACCTTATTGATCATTCACTAGAGATTTGGTGAGCTGCTTCAAATACAGCTTCTGTCCCCAGGTACTATATAATGTACAGTGTTTGAGTGAAAGAGCCATAGTGCTTTTAAAAAGACAAGGCTGTGATGTGACCTCTAACTCCCGTTGAGTAAAAGGACACTGCACACTGATGCCAACGATTATGCTGGTACTTAGAAATGTCAAGGCAATCAAGTACAGTGGCTAGTTAGCTCAAGAGGCGGCAGCTGACAAAAGGTAGGGGTCAGTAGGGACAATAAAAGCAAGCTGTATTTAGGGGAGAGGAATAAGATAGAGGGCAGCTGCAGCACATGTATACAAAGTAGATAGTTTCAATAGCCACAGGAGGTCATGGGTAGAGCAGTTTCATTAACCAGAAAGGAGGCTGGTCTGCTTTCGCGCCATTCAGCAGCCACTGCTGGAAGCAGGGAACGCCATTTCACCTACACCACAGGGGGGGATGCTGAAATGGATGCACTTAGTGTAATTCAGCAGAGAAGAGGCCTGCGTGTGCTGCCTTCAGGAGCGTTGATAGCCTTTTAGACAAAGTGGTATGTGTGTTCCATTTCTGAAATACTGTACATGATCAAAATAAACTGCAGTGAAAAATAACAAAGGAAAAATGGCAGGAGCAGAAGGATATCTAGCAGCGTACAACCTCTTTTGCAAATCCGACTTTTCAAAACTCTCTGACCATGAGCCAGGCAGGACGGTGCAGAGCCTGTATCACTGGCTTAACAATGGATGGATTGGAGAGCTAGGGAGGGAGAGTTACTGGGAGTCCTAGACCCCTCCAGACAGCTGGCTGGGAGAGAATGGGCAGCAGGGAGACCTCGGCTCAACTCACAGTTTCATAAGCTTTACATTATGCAGTGCGAGGCATGCTGGCGATCTGTTACACAACAGAGGGATCACCATTTGCGCAATTAGCTTGGTGCATTGCTAAAATACCTTTAGACAGAGGGAGAAATGGAACAGAGGAACAGCTAGAGAATCCCTGCTCTAAGAAGAGGGTAAGACAGGACACAGTGGACAAAGGATGAGTGCTGCGGACGTATTATAACATGGTGATATAAAACACGCTCACAACCACACACTGGATGATTAGTGTGTGATAACTCTGGGTACTGTTGGCTTTTTTTCAATCACTCTCTGCTGGTGTGGCTCAGTGACTGGTAATAAAAGCAGATAAGCTTCCATTTAAACGGGTGATGCCGTTTCCTGCTGCTCCCCAGATGGAAGAGGGTGCTgtgcgcatacacacacaataaataacccgagacagaaggagaaaggATGCTACACCAACCAGTAACAGTATCAATATAATGAGACAGTATCATACGACTCCCCGTTTTCCTATTCATACTTCAAAGACAGAGAAAATCTTTCTCTCATCACTCTGCTGCATTGAAGTGAGATGTAAAAGTACTTTAAAGTGCCCTCAAAGTATCTCCATCATAAAACCTTGCATAAAAACTATATATGTTTATTACCCAAGTCTCACTTTCAAAGTCACATCACAAGCTACATGCAGCTCTAATGGATACAACAGGATGCAACAGAATGAGTCAGAGAATACAAAAGTTGACATTCATTGGACTCTTTGACTCATGAAAATGAATGAAGGCTTGTGACTGACAGCAAATTTATACTATGACTGATAAGTGCATTAATTGCAAACGAGCTCCTGCTGAGAGAGTGATTGAGAGAAGGATGCTGAACGGCACTGAAAGGGGTACAGTACACAGTTTGTGTGATTAGATTACAGCACAGAGTATAGTAGTGTCTGTGATAACAGACACTACTATAAACAGAACTAAAGAGAGCTAGTTGTGGGTATACAGCTAACAGTTGTAGAGAATCAGACAAACTTACGATGTGAGGGGAATCGCGGCCCATGGAAATGACCGTCCTGTTAACGGTCCTCAGCAGCTTCTCCATGACGATCTGCACGTGCCACTGGGTGGGACCCTGTGAAAAAATACAGTTATTGCTTACATTTCCCACGAGGACTATAAACACGTCTTCTTATTTTAAAATTACAATAGATTTTGAATGACTGATTGCTGAATGTCCGTGCAAATTGACAAGTCTAGGTGATTGGGGTAAATGTCAAAGCTTGTCCTGTACATTTGGCCAGTTACcagctcaaataaaaaaaaaaaaaacatcaccatGGAATAAGAGCCAAATTGCCAATAACTGCTTAAAAGCTATTTTCCAGACATTGTTGAAGTGGTTTACGGAGGGGATATGTCCTTTAATTTCAAGAATTACACACAGTAACAGATCACCAAAAATCTGCTTGTTTCTTGGTCCATGGATCAACTTTTCACCAAAATTCCCTGAAATTTGTTCACGTTTTCAATAATTTCCTATTAACTAAAACTGCTTCTTTACTACTTTTGGTGACAATTTAAAACCAATTATATGTTGTACTTTATCAATAGATatgacacaataataatactGCTATAATAATACTTAATACCGCTTTCAAAAAACTTAAAACTCTGAAGATACTTTTGTTAAGAGACCTGACAAATACGACAATGCAGCCAACATGATAAATACACTGTGAACCCTAGCATTTGGAGGGGGAAACACCCATGGAGCAGTTGTACCGTTGTCATAAGTGGGATGATTTCCCATGGACCTGCTTATTAGTGAGTTTGAGTTAGCGCAGGGCTGTTTCTCCCGGTCTCTACCCATCTGTAGGGGAAATCTTCTAAGCAGACCGAGCTCTGCAGCGTCAACCTAAACTTTCAATAATTTACACAGCTCTGCGGTTGAGGAACTCATGCACTCAGGTCTgtgcacatatgcacacacaaatattcacAAAAGCAAGTGTGACGCACATCTTTTGTGAAAACACGGACCCAGACTGGTTTTTTTCTGGGCCCTTTATAAAAGTCCTACACAAACCCAGcacatgatgaaaaagtcatgatttttattttaatccatTTAAATATACAATTAGATATTTATTCCTAAGGTATAATTGTTTAATAACTTCAAAAGTCAAATGGACATGTGTACGTGTGCATGGAAGTCTATGAaagcatacagtgcagtacaggTATAAAAGAGAGCAGGGCAGGGAGAGGACGCAGCacaaaggcagagagagacagaaggagtgTGAAAGGGAGAGCAAGTGGGAGATAATATTGAGCAGAGTGGAGTGTGGGAGGCGAGGCCGTCGTGATCAATGGCGAGGGGAGTCTGAGGGCCTGAGGGAGGACATCAGGAGTCTGGGCATGGAATAGGTTGAAACACTCGTGAagcagctgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgttattataTGTGCAATGAGGTCTGAGGCTGATGCCCGAGTGTGAGGGATGTGAACTTGTAATGGTAAGCTATTTTCTGCCACTTTATAAACTAAACAATGAATTCATTAATTGGAAAAACAATTAATAGATTAACcgataaatgaaaaaaaaaaaaaaaacattagcttTGACTGTCTACATAACTGGCTCTGTGACTGATTTACCATGTAATAAAGAGTTCATCAACATGTTGTTGGAGCACGTTGTTGAATGATGTTGAAGATGGCCTTCTAGCCACACTGAGCGATGAATTACTGAGCAAGGCCAACTCTACAGGTTAGTAAATTAACAGTGCTGTAAAAGGATCTCCTGCCAGGGCATGCAgggcaataaaataaattaagaaCAGCACACTGATTAGTAGGTATTCAGAAAAATAACCACAGTCCAAATAGCTTCTTCTTTATGCAGGGACTTCTGGATCCCCTTGTTATGCGattaattatcccagagagaaataaatgtaCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286510 lncRNA upstream 282945 11080115 ~ 11080410 (+) True G211417
TU286508 lncRNA upstream 285402 11073498 ~ 11077953 (+) False chac2
XR_005637787.1 lncRNA upstream 416712 10944929 ~ 10946643 (+) True LOC120550777
XR_005637785.1 lncRNA upstream 419090 10937601 ~ 10944265 (+) False LOC120550775
XR_005637784.1 lncRNA upstream 419090 10941297 ~ 10944265 (+) True LOC120550775
TU286820 lncRNA downstream 52643 11453221 ~ 11457561 (+) True LOC120550877
XR_005637798.1 lncRNA downstream 52650 11453228 ~ 11456684 (+) False LOC120550877
TU286879 lncRNA downstream 324563 11725141 ~ 11727426 (+) True G211665
TU286881 lncRNA downstream 333049 11733627 ~ 11735251 (+) True G211666
TU286929 lncRNA downstream 421226 11821804 ~ 11822046 (+) True G211706
XM_039787174.1 mRNA upstream 118959 11242599 ~ 11244396 (+) True LOC120550580
XM_039787827.1 mRNA upstream 215972 11143384 ~ 11147383 (+) True LOC120550888
XM_039787819.1 mRNA upstream 221992 11121211 ~ 11141363 (+) True LOC120550886
XM_039789382.1 mRNA upstream 285348 11073477 ~ 11078007 (+) True chac2
XM_039787615.1 mRNA upstream 400696 10952187 ~ 10962659 (+) True msh2
XM_039789395.1 mRNA downstream 76386 11476964 ~ 11494645 (+) True c21h10orf90
XM_039789396.1 mRNA downstream 76386 11476964 ~ 11494645 (+) False c21h10orf90
XM_039787204.1 mRNA downstream 96004 11496582 ~ 11569280 (+) True LOC120550601
XM_039787206.1 mRNA downstream 170139 11570717 ~ 11576144 (+) False dhx32a
XM_039787205.1 mRNA downstream 170143 11570721 ~ 11577632 (+) True dhx32a
TU286461 other upstream 436129 10922448 ~ 10927226 (+) True cript
TU286458 other upstream 456038 10902704 ~ 10907317 (+) False LOC120551799
TU286436 other upstream 559383 10801340 ~ 10803972 (+) True G211354
TU286403 other upstream 637796 10723533 ~ 10725559 (+) True G211336
TU286399 other upstream 648001 10702966 ~ 10715354 (+) False sncgb
TU287023 other downstream 687107 12087685 ~ 12088135 (+) True G211777
XR_005637885.1 other downstream 1149999 12550577 ~ 12597021 (+) False LOC120551485
unassigned_transcript_1166 other downstream 1210243 12610821 ~ 12610902 (+) True trnal-aag_11
TU287259 other downstream 1320280 12720858 ~ 12809117 (+) False LOC120551603
TU287481 other downstream 1979638 13380216 ~ 13380934 (+) True G212108

Expression Profile