RNA id: XM_039788410.1


Basic Information

Item Value
RNA id XM_039788410.1
length 5668
RNA type mRNA
GC content 0.57
exon number 51
gene id col1a1b
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 8543535 ~ 8564587 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTAGGCAGTAGGGAGTTTCTGCTGGGGTCTGGATTTTGGAGTTACACACACCGGACCCTGCCCTGTATGAGTGGTgtctgaggaaaaaaaaaggattccCCCTGTGTCGCAAAGAATCTACATGTCTAATATTTAGACATGTTCAGCTTTGTGGATATTCGGTTAGCGCTGTTGCTCAGCGCAACAGTGCTTTTGGCGAGAGGTCAAGGCGAGGATGATAGCTTATTTGGCAGCTGCTCATTAGACGGACAGTTGTACAACGACAAGGATGTATGGAAACCAGAGCCCTGCCAGATTTGCGTCTGCGACAGTGGAACCGTCATGTGCGACGAGGTGATCTGTGAGGACACATCCGACTGCGACGACCCCATCATCCCAGACGGAGAGTGCTGCCCTATCTGCCCCGACACCGCCGTGGACCCACCCGTGATTCCGGATGAGCCAACAAAGGGAGACGTTGGCCCCAAGGGAGACCCGGGTCCTGCTGGTCCTCCTGGCAATGATGGACTGGATGGACAGCCTGGTGTTCCTGGCCCTCCCGGCCCCCCCGGCCCACCTGGCCTTGGCGGAAACTTCTCTCCTCAGATGAGCTATGTTGACCACTCCAAATCCAGCGGCGGCGGAACTGTCCCTGGCCCAATGGGTCCTATGGGTGCTCGTGGTGTTCCCGGACCCCCTGGCTCTTCTGGTCCCCAGGGTTTCACTGGCCCCCCTGGTGAGCCCGGTGAGCCCGGTGCTTCTGGTCCCATGGGTCCCCGTGGTCCTGCTGGACCCCCTGGAAAGAACGGAGATGATGGTGAGCCCGGCAAAGCTGGTCGCCCCGGTGAGCGTGGAGCCGCTGGCCCCCAGGGTGCTCGTGGATTCCCCGGAACCCCCGGACTCCCCGGCATCAAGGGACACAGAGGATTCAGCGGTCTGGATGGAGCTAAGGGAGACGGTGGACCCGCTGGCCCCAAGGGAGAGCCTGGTTCACCTGGTGAGAACGGTATCCCCGGCGCCATGGGTGCTCGTGGTCTTCCTGGTGAGAGAGGTCGCCCTGGACCTCCCGGCCCTGCTGGTGCTCGTGGTAATGATGGCAACACTGGTGCTGCTGGACCCCCTGGACCTACTGGACCTGCTGGTGCCCCTGGCTTCCCCGGCGGTGCTGGTGCTAAGGGAGAGACCGGACCTGCAGGAGCCCGTGGAAGTGATGGACCCCAGGGATCCCGTGGTGAGCCTGGTAACCCAGGACCTTCTGGACCCGCTGGAGCTGCTGGCGCCCCCGGATCTGATGGCCAAGCTGGTGCTAAGGGTTCTCCTGGTGCTGCTGGTATCGCTGGTGCTCCTGGTTTCCCTGGCGCTCGAGGTCCTGCTGGAGCTCAGGGAGCTGTCGGTGCTCCTGGTCCCAAGGGTAACAATGGTGACCACGGTCCCTCTGGTCCTAAGGGAGAGCCCGGTGCCAAGGGAGAGCCTGGCCCCGCTGGAGTTCAGGGACTTCCTGGCAACTCTGGTGAGGAGGGCAAGAGAGGAGGACGTGGAGAGCCCGGTGGTGCTGGACCCCGTGGACCCCCTGGAGAGCGCGGCGCCCCTGGTGCTCGTGGGTTCCCTGGTGCTGATGGAGCTGCTGGTGGCAAGGGAGCCCCCGGTGAGCGTGGTTCCAATGGCGCATTGGGAGCTCAGGGAGCCACTGGTGAGTCTGGAAGCCCCGGTGCTCCTGGCGCACCTGGATCCAAGGGTATGACTGGTAGCCCTGGAAGCCCCGGCCCCGATGGCAAGACTGGACCTTCTGGTGTCTCTGGACAAGATGGACGCCCCGGACCTGCTGGCCCTGTTGGAGCCAGAGGACAGCCTGGAGTTATGGGATTCCCTGGACCCAAGGGAGTCGCTGGTGAGAATGGTAAGCCCGGTGAGAGAGGTGCCGGTGGTCCTTCTGGTGCCGTTGGTGCTCCTGGCAAAGATGGTGACGTTGGTGCTCCTGGACCTTCTGGTGTCGCTGGACCTGCTggagagaaaggagagcaggGACCTGTTGGTTCTCCCGGATTCCAGGGTCTTCCTGGACCCCAAGGTGCTACTGGTGAGACTGGCAAGCCTGGTGAGCAGGGCGGCCCTGGTGAGGTTGGACCCCCTGGCCCATCTGGACCAAGAGGCGACAGAGGTTTCCCCGGTGAGCGTGGTGCCCCCGGCATCGCTGGCCCAACTGGAGGACGTGGTGCTCCCGGCCCTGCTGGTAACGATGGAGCCAAGGGAGAGCCCGGTGCTGCTGGTGCCCCAGGAGGTCAGGGAGCCCCCGGTATGCAGGGAATGCCCGGTGAGCGTGGAGCTTCTGGTCTCCCCGGTGCCAAGGGAGAGAGAGGTGATGCTGGAGCCAAGGGAGGTGATGGTGCTGCTGGCAAAGATGGCGTGCGTGGCATGACTGGTGCTATTGGAGTGCCTGGACCCCAAGGTGCTCAGGGTGAGAAGGGTGAGCCTGGTGCCGTTGGAGTTGCTGGACCCACTGGTCCTCGTGGTGCCCCTGGCGAGCGTGGAGAGACCGGACCCTCTGGACCTGCTGGATTCGCTGGACCTCCTGGTGCTGATGGTCAGCCTGGTGCCAAGGGAGAGAGCGGTGACACTGGACCCAAGGGAGACGCTGGTGCTCCTGGACCTAGTGGACCTGTTGGAGGTGCTGGTCCTCAGGGACCTGCTGGTCCCGCTGGAGCTAAAGGTGCTCGTGGTGGTGCTGGATCCCCTggtgctACTGGTCCCCCCGGACCTGCTGGAAGAGTTGGACCCCCTGGCCCTCCTGGAGCTGGCGGAGCCCCCGGACCCGCTGGACAAGTCGGCAAAGAAGGAGCAAGAGGAGCACGTGGTGAGACCGGTCCCGCTGGTCGCCCTGGTGAGGCTGGCGCTGCTGGAGCCCCAGGACCCTCTGGAGAGAAGGGATCTCCTGGCTCTGATGGATCCCCTGGCGCCCCTGGTACCCCCGGACCCCAAGGTATCTCTGGACAGCGTGGTATCGTCGGTCTCACTGGACAGCGTGGAGAGCGTGGTTTCACTGGTCTGCCTGGACCATCTGGTGAGCCTGGAAAGCAGGGACCTCCTGGAATCCATGGTGCCCGTGGACCCCCTGGACCTGCTGGACCCCCTGGACTGTCCGGTCCAACCGGAGAGGCTGGTCGTGAGGGATCTGCCGGTCACGATGGTGCCCCTGGTCGCGACGGAGCAACTGGCCCCAAGGGAAACCGTGGTGAGACTGGTCAGGCTGGACCCCCCGGACCCCCTGGTGCTCCTGGACCCCCCGGAAGTGCCGGCCCCTCTGGCAAGACTGGTGACCGTGGAGAGTCTGGTCCCGCTGGCGCTGCCGGTCCTGCTGGCCCTGCTGGTGTCCGTGGTCCCGCTGGCCCTGCCGGTGCAaagggagacagaggagaggctGGCGAGGCAGGAGACAGAGGACACAAGGGACACAGAGGATTCACCGGCATGCAGGGTATGCCCGGACCTGCTGGAGCTTCTGGAGACAGAGGACCTGCTGGCGCCTCCGGACCAGCTGGACCTAGAGGACCTTCTGGATCTAATGGCTCCCCTGGTAAGGATGGCATGAACGGTCTGCCCGGACCCATCGGACCCCCTGGACCTCGTGGTCGCAATGGAGAGATGGGACCTTCTGGTCCTCCCGGACCTCCTGGACCCGCTGGACCCCCTGGACCTCCCGGCAGTGGATTTGACTTCATCAGCCAGCCTATTCAGGAGAAGGCACCCGATCCCTTCCGTGGCGGCCACTACCGCGCTGACGACCCCAAGGTTATTCAAGATCGCGACATGGAGGTGGACACCACCCTCAAGACCCTGACCCAGAGAGTGGAGAAGATCCGCAGCCCCGACGGTTCCCAGAAGAGCCCAGTCCGCATGTGCCGTGACCTGAAGATGTCCCACCCTGAGCTGAAGAGCGACTTGTACTGGATCGACCCCAACCAGGGCTCCTCTCTGGATGCCATCAAGGTCCACTGCAACATGGAGACTGGCGAGACTTGCATCTACCCCAGCGAGTCCATCGTTCCCATGAAGAACTGGTACCTCAGCAAGAACATCAGAGAGAAGAAGCACGTCTGGTTCAGCGAGTCCATGACCGGTGGATTCCAGTTCCAGTATGGCAGCGATGGAGCTGATCCCGAGGACGTCAGCATCCAGATGGCCTTCATGCGCCTGATGTCCAACCAGGCCTCTCAGAACATGACATACCACTGCAAGAACAGCATTGCCTACATGGACTCCGCCACCGGCAACCTGAAGAAGGCCCTGCTTCTCCAGGGATCCAACGACGTCGAGATCAGAGCCGAGGGCAACAGCCGCTTCACATACAGCGTCAGCGAGGATGGCTGCACGTCACACACTGGCACATGGGGCAAGACAGTCATCGACTACAAGACATCAAAAACATCCCGCCTGCCCATCATTGACATTGCTCCTATGGATGTTGGTGCACCTGATCAGGAATTTGGCGTCGAAGTTGGCCCCGTTTGCTTCttgtaaaaagaaagaaatatggacatgacattgttgttttttttctagcaGTCATCTCTAAATCCTTTTCCTATGCATTCAAAACTCATTTGGCTGCCATTGGTCCACATGCTTAAAACCACTCTACTGAAGacgatgtttgtgtttttccaaTCATGAGAAGTTTTTGGGACTGCTACTTCAACCAAAACCAACCACAAGGACACTTTAAAAAGAATCTTTTGTTTCCACTGGCAACAAGAAAATAATATATACTTGTGTAAAATTTCCCCCTGGAGattgagagaaaaagaaaaaaagaaaggtttacACACGCAATGAAACACAGGTGACTTTTGCCATTTTCTACCACTGCGGAAGGACATTGAAAACAACAAGTGATGTGTACCATTTTTCTGGTGTTAAATAAATTGTAAAAAGTGTGAAAAGCGTCTTCTTGTTCTAAAttcttgaaagaaaaaaaaaaaaaacacctgaataTTGCTCCGACAAAGACCAGCGAAAGAGCAAAAACAAAGAATTTCACCTTCATTGCAATATGTAGATGGCTACCTCATAACAAGAAgtcaagacattttttttttcttaaatgagAAAGGGTATATTTTACACAAGTTTAGTGTGGGGAAATCAAAAACATTCAAAGGTGCTATTGCCATTTCAACGAGGACCAGTTATTGGTGTTTGATGGTGAAACTCTCACGGTCATACTGTAATTATTGCCACTAATGCCTGCAGAACCTTTGGTGCTACTAAATTGACTCATTGTCTTGTTGTCTATGCAGTACAATGGTTTTCTTCTTAAGTGTTCTGAAAAGGTGATCACTGCAGATGTAATGCATGCAATCATGTCtttgtagataaaaaaaaagcaagtgaCTCTGGTTCAATATCATTTCCCTGCACATTTGTCCAGTGTTGATCCCTCTGTCTGTTTGCCCCCCATGGAAAACTCCTcttcactaaaaaaaaaaaaaacagcacacatCTCCCACCttgttgtttatgttgtttgttgATGTCTTTCGCGAAGGGTTTCTTAAAAAAGAATTTGAAGCAGACCCACTTTCATGGTTTAAAAGAGAGATTCTGTACTTATTTTGTACATGTATAATACATTGagatgtttttaattattttgggTGCTGAAATAAAGCATGTGAAGTGGTCTACTCAGTG

Function

GO:

id name namespace
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285714 lncRNA upstream 45881 8496613 ~ 8497654 (+) True gngt2b
TU285696 lncRNA upstream 85332 8456750 ~ 8458203 (+) True G210837
TU285646 lncRNA upstream 342049 8201281 ~ 8201486 (+) True G210799
TU285633 lncRNA upstream 364382 8171115 ~ 8179153 (+) True G210790
TU285631 lncRNA upstream 384496 8158836 ~ 8159039 (+) True G210789
TU285729 lncRNA downstream 16418 8581005 ~ 8625108 (+) True G210866
TU285825 lncRNA downstream 109419 8674006 ~ 8674260 (+) True G210938
TU285867 lncRNA downstream 404496 8969083 ~ 8971699 (+) True G210964
TU285871 lncRNA downstream 415221 8979808 ~ 8980033 (+) True G210968
TU285876 lncRNA downstream 446425 9011012 ~ 9011388 (+) True G210972
XM_039789089.1 mRNA upstream 37028 8499730 ~ 8506507 (+) True si:ch1073-13h15.3
XM_039789254.1 mRNA upstream 45907 8496662 ~ 8497628 (+) False gngt2b
XM_039789031.1 mRNA upstream 70143 8469606 ~ 8473392 (+) True LOC120551547
XM_039789033.1 mRNA upstream 74926 8459854 ~ 8468609 (+) True lsm12b
XM_039789032.1 mRNA upstream 74926 8459856 ~ 8468609 (+) False lsm12b
XM_039788206.1 mRNA downstream 12075 8576662 ~ 8596015 (+) True LOC120551063
XM_039787391.1 mRNA downstream 37259 8601846 ~ 8609664 (+) True fbxw10
XM_039787937.1 mRNA downstream 213067 8777654 ~ 8815625 (+) True LOC120550936
XM_039787938.1 mRNA downstream 255175 8819762 ~ 8840446 (+) True hs3st3b1b
XM_039789380.1 mRNA downstream 478059 9042646 ~ 9050128 (+) False LOC120551795
XR_005637922.1 other upstream 343856 8199565 ~ 8199679 (+) True LOC120551817
TU285573 other upstream 481266 8057743 ~ 8062269 (+) True dydc2
TU284934 other upstream 2071380 6470656 ~ 6472155 (+) True G210266
XR_005637869.1 other upstream 2450797 6083435 ~ 6092738 (+) False kctd2
XR_005637777.1 other upstream 2855639 5591336 ~ 5687896 (+) False LOC120550763
unassigned_transcript_1162 other downstream 36591 8601178 ~ 8601248 (+) True trnag-ccc_1
XR_005637919.1 other downstream 478059 9042646 ~ 9046468 (+) False LOC120551795
TU285955 other downstream 1008528 9573115 ~ 9576418 (+) True rpl38
XR_005637867.1 other downstream 1319784 9884371 ~ 9898509 (+) False qki2
XR_005637868.1 other downstream 1319784 9884371 ~ 9898509 (+) False qki2

Expression Profile