RNA id: XM_039788476.1


Basic Information

Item Value
RNA id XM_039788476.1
length 2351
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC120551220
representative False

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 10280624 ~ 10298425 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CtcatagacacacactcagatacaCACTTGTCCTCATTTAGCAGCAGGCTTGCTCCCCTCTGTTGGAATGAGTGCCTGAGGATTAAGAAGCAGGGAGGCTGGACTAGAGGACCACAGGATTGGGATTGGAGGGCTCGGGCAGGACTGGATTATTGTTGGAGAAACCAGATTGGACTGCAGAAAACAGGCTGTTTTCTACTGGGATTGGTGACTCAGTTAGACTTGTGGACTCTATGAAAAAACCTGGGGTGAGAATGGAAGCTTGTTTTTAGCTGCACTGGGAGTACTGGGACCACTGAGACTGGTGGTGAAGCCACTCAGCAGCAGACAGACGCTTTCTCTGTGCCTGATGACCTCAGTccagaggagagacaggagCTGGAAAGCATCCGCCGCAGAAAACAAGTGCTACTGCAGGACATACAAAGGCTGAAGGATGAGATAGCAGAGGTGACCAGCGAGATTGACAACCTGGGCATAACTGAAGAGAGGAAAAGTATGCAGAGGAATAAACAGATGGCCATGGGCCGAAAGAAGTTCAACATGGACCCCAAGAAGGGGATTCGCTTCTTGATTGACAGCTCCCTGCTGAAAAACACCAGCCATGACATCGCCCAGTTTCTCTACAAGGGTGAGGGGCTTAATAAAACCGCAATCGGCGACTACCTGGGGGAGAGagaTGACTTCAACATTGAGGTTCTGCACGCTTTCCTGGAGTTACACGAGTTCACAGACTTGAACCTGGTTCAGGCTCTCAGGCAGTTCCTGTGGAGCTTCAGGCTGCCGGGTGAGGCTCAGAAGATTGACCGCATGATGGAGGCGTTCGCCCTGCGATACTGTCGCTGTAACCCCGGAGTGTTTCAGAGCACAgATACCTGTTATGTGTTGTCGTTTGCTGTGATCATGTTGAACACCAGCCTACACAACCCTAATGTGAAGGACAAACCCTCCGTTCAGAGATTCACAGCGATGAACAGAGGCATCAATGATGGAGGAGACCTGCCAGAGGAGCTACTCAGGAACCTGTACGACAGCATCAAGAATGAACCCTTTAAGATCCCGGAGGATGATGGAAACGACCTCACACACACCTTCTTTAACCCCGACCGAGAAGGATGGCTGCTGAAACTCGGAGGTGGACGAGTTAAGACCTGGAAGAGACGCTGGTTCATTCTTACAGATAACTGCCTCTACTACTTTGAATACACAACTGATAAAGAACCCAGAGGAATTATTCCACTGGAAAATCTGAGTGTCAGAGAAGTCGATGACTCCAAGAAACCGAACTGCTTCGAGCTCTTCATCTCCGACCACAAAGATCAGGTGATCAAAGCATGCAAGACGGAGGCAGACGGACGCGTCGTCGAGGGAAACCACACTTTTTACAGAATCTCTGCCCCGACCGCAGAGGAGAAGGATGAATGGATCAACAGCATCAAAGCTGCCATCAGCAAAGACCCGTTCTACGAGATGCTGGCTGCTCGGAAGAAGAAGGTCTCCTCTCTGAAGGGGCTGTAGAGCTGCTGAGGATCAAACGTTGAAAGTTTAGACTTAATGCCGCTGACTGGATGTGGACCTgatcctcctgctgctgcagtgaCACGTGGACCTTACAGAGAGGATTCAGCTTTAAAAGAAGCTGTTGTCACCTTTTTGAACTGGCGCACCTTCAGTATCGACACCTCGTTCTCTACAGCttttgtttaaagtttaatttcCCATATAGAGATAAAATCAGtcgaaaacctttttttttattttttttatttatcctcCTTTTGAACACTCTACTTCTGCAGTACTGTATCGATGCTGTGCTCTCTGGTTGGAAGTACCGCTCCACCTACAATCTGCTGTAATGTCTGATTTCCCTCAGAGCCACCTCATACATACTCTCTGTTTGGTCTCAACAGGAGATGTTTTCAGTCAGAATGGAACTTACTGATACATGAATTAATTGAGTTCGCATTTAAACACAAGGTGAGAAAAAGACACCTGCTGATGTTTGATAAAAGCCTTTCTTCACATTGTGAAAGACACTTTCATCTTCATTTTGATCAGTTGAGGTGTTTTTCAGACATGGATTAAACCCACATTAAAACCGTTGATGAAGATATCGGATGGAAAACCAATTTAGTCATCTCGTCTGTGACGCTGGCCTTTGTTTAGTCAGATTTGCCATAAAAAGCGCCTTTCTAAGCCAGTTTTCTTACTGCTGTTGGTATTTTGTCAAAGAACTGTTAATAAAAATGAAGGTCATGCATAAATagctaattatttatttatccagaTTTGTTGTAATTTATTGTTCGGAGTTTTGTGTCATTAAAGGCTTGCAAACCGACATTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286273 lncRNA upstream 39965 10243617 ~ 10244815 (+) True G211256
TU286274 lncRNA upstream 39965 10243617 ~ 10244815 (+) False G211256
XR_005637849.1 lncRNA upstream 95807 10186917 ~ 10188973 (+) True LOC120551242
TU286152 lncRNA upstream 119254 10165143 ~ 10165526 (+) True G211182
TU286151 lncRNA upstream 121102 10163382 ~ 10163678 (+) True G211181
TU286341 lncRNA downstream 151254 10449679 ~ 10456084 (+) False G211301
TU286342 lncRNA downstream 155208 10453633 ~ 10531279 (+) False G211301
TU286356 lncRNA downstream 207901 10506326 ~ 10508324 (+) False G211306
TU286357 lncRNA downstream 207901 10506326 ~ 10508324 (+) True G211306
TU286372 lncRNA downstream 265821 10564246 ~ 10586097 (+) False usp54b
XM_039788494.1 mRNA upstream 16156 10256074 ~ 10268624 (+) True timp2a
XM_039788492.1 mRNA upstream 29419 10247698 ~ 10255361 (+) True sfxn2
XM_039788460.1 mRNA upstream 51509 10222323 ~ 10233271 (+) True trim8b
XM_039788489.1 mRNA upstream 194702 10084571 ~ 10090078 (+) False LOC120551228
XM_039788493.1 mRNA downstream 26751 10325176 ~ 10329213 (+) True socs3b
XM_039788466.1 mRNA downstream 41192 10339617 ~ 10342094 (+) True tha1
XM_039788431.1 mRNA downstream 47440 10345865 ~ 10361903 (+) False eef2k
XM_039788430.1 mRNA downstream 48041 10346466 ~ 10361903 (+) True eef2k
XM_039788433.1 mRNA downstream 48041 10346466 ~ 10361903 (+) False eef2k
XR_005637921.1 other upstream 67559 10217108 ~ 10217221 (+) True LOC120551816
XR_005637923.1 other upstream 68301 10216365 ~ 10216479 (+) True LOC120551818
TU286128 other upstream 219654 10062785 ~ 10065126 (+) True G211164
TU286110 other upstream 222078 10053261 ~ 10062702 (+) True G211151
XR_005637868.1 other upstream 386271 9884371 ~ 9898509 (+) False qki2
unassigned_transcript_1164 other downstream 65407 10363832 ~ 10363913 (+) True trnal-aag_10
TU286340 other downstream 157814 10456239 ~ 10460499 (+) True G211301
XR_005637805.1 other downstream 265827 10564252 ~ 10621412 (+) True usp54b
TU286397 other downstream 404541 10702966 ~ 10715226 (+) True sncgb
TU286398 other downstream 404541 10702966 ~ 10715226 (+) False sncgb

Expression Profile