RNA id: XM_039788495.1


Basic Information

Item Value
RNA id XM_039788495.1
length 2101
RNA type mRNA
GC content 0.51
exon number 4
gene id srsf2a
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 10077190 ~ 10080626 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGCTTAGTTGCCGCCATTTCACGTGAAAGCAGCGCGGTAGGGATGACGACTAGtgcaaaacaattaaaaacaccaGCTAGAATTTGAACCAAATTCGCTAATTGGAGATTTATAAACTAACAGTAACCGGTTACTTAACAATAGGGCCTAACGAGTTTCGACTTAACAGTCCGGCTGTCTTGCTAGGAGACGAAAAAAATGAGCTACGGAAGGGCGCCGCCAGACGTTGAGGGTATGACCTCCCTGAAAGTGGACAACCTGACTTACCGAACTTCGCCGGAGACTCTGCGCCGAGTTTTTGAGAAGTACGGCCGTGTGGGAGATGTGTATATCCCCCGAGACAGGTACACCAAGGAGAGCCGCGGGTTCGCCTTCGTGCGGTTCCTCGACAAGCGCGACGCCGAGGACGCCATGGACGCTATGGACGGAGCGCTGCTTGACGGGCGGGAGCTTCGGGTGCAGATGGCCCGCTACGGACGACCTCCGGACTCCATGTACAGCAGGAGAGGCGCTCCGCCACGCAGATACGGAGGCGGGTACGGCGGACGCAGAAGCAGGAGCCGTTCAGGAAGCCCTCGTCGCCGCAGACGTAGCCGCAGCCGCTCCAGGAGCAGAAGCCGTTCCCGATCCAGGAGCCACCACCACTACAGCCGCTCCAGGTCTCACTCTGACTCCAGATCCAGGTCCAAGTCTAAATCCAAGTCCAGGACCCCCAGACGGAGCAAGACAAAGTCTCCCTCCAGGTCTCGGTCCTCCAAGTCAAGGAGTCGAACCCCGCCTTCCAACAGAGGGTCCAAATCCAGGTCCCGCTCCAAATCCAAGAGTAGGCCGAAATCTCCAGAGGACAGCGAGGCAATGACTTAATCCAGACATGGACACAACATGACGGTATTCATGGGAAAGGGTGGATTATATTATTTGCTTCAAATATATGAGATGGCTATCTGTCATCACTTGGGTTATTATTCTGCAGGCTTGGTGCTATCTAACAGTCATTTGCACGCAAGCAACAAAGTCTGCAGAATcctgaatgttttatttaaaataagatTGGGACTGATGTAGTCCACAGTCCTAGTTCTGTGTGTCCTTTACTTTGCGTGTACGTTCAGCAAATccaaagcacacacagacatgagatttGGGTTAATGTGacctaaaatatattttaaaatgggaATGTATGGGAGGGTTCTTCACTCAAAACGTTCACCTAAATGTGGAATTCTTTCCTCCAAGCTGCTGAGTCCTGTTtgcaaagagaggaggaggaggaggagatgggggTGTGGCAGTGTGAGAGCAGTTAGTGTGTGACCCGCCCATGTGACCTGCCTGTTGCTGAGAGCGATGGCAGTTGCTAAGAAGCAGGTCACCAAGGCAACGGTGGTTGCTATGGAGCAGGTCGTCATGGCGGTGGTTCGGGCTGTCAGTTGGTGTATGAGGTGGTGTGGTGAGGTACGTTCGCGGGAATCACAGGCAGATGCACTGAGCACTGTTCCCACCTGTGCCTGTGGGTTCCTCCGCCTCTCACAAAGGGAACAGagATCTCAGATGATTGAGCCTTTGCTGAGGACATCAGGAAGAGTCTCACATTGAGCAAGTGGACTCCACTATTACCACTGAATGCAGACTGAAAGGCGCAGTTGTGTAGCAGTTGAGTAATGCTGGTTAGCTGTTAAGATGCGGTGCGGTGCGGTGGTGACATGGTGTGGCGTGTTGCGGTGCTGAGTGCCCGGCCCTGTTCCGGGGCTCGACCCTCCGCTGCCGTTTGCTGGTTTGTAAGCTCACAGGTGTGGCAGATCATCCATCCTCTCCTGTCTTGTGACCTCTCCTTCCCTCCATGTGCTATACAGATTAtttcctcctttctttttctctgtattctccctcctcttctcctctgtgGTTTATCCACTTTTGAAAACTGGTTTGCTTGCTTTTTTGAAATTGGGTCCAGTGAAGAGTTTAAAGGGCAGTCCAGGCTGCCtaatgaatgattttttttttgtgtgtgtatttcattcCTCTGTGAACCTCTCAAATGTCTTGTAATTGCTTTAGGTGAATGCTAATAAACATCTTTGTTGTTCAAGTCAA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12891 SRSF2_8, SFRS2A_B; serine/arginine-rich splicing factor 2/8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286116 lncRNA upstream 66024 10010881 ~ 10011167 (+) True G211157
TU286082 lncRNA upstream 92495 9926654 ~ 9984696 (+) True G211130
TU286093 lncRNA upstream 122510 9953875 ~ 9954681 (+) True G211139
TU286023 lncRNA upstream 227311 9849494 ~ 9849880 (+) False LOC120551355
TU286016 lncRNA upstream 239066 9835060 ~ 9838125 (+) True G211085
XR_005637846.1 lncRNA downstream 55299 10135925 ~ 10136650 (+) True LOC120551238
TU286145 lncRNA downstream 59155 10139781 ~ 10140042 (+) True G211175
TU286151 lncRNA downstream 82756 10163382 ~ 10163678 (+) True G211181
TU286152 lncRNA downstream 84517 10165143 ~ 10165526 (+) True G211182
XR_005637849.1 lncRNA downstream 106291 10186917 ~ 10188973 (+) True LOC120551242
XM_039788428.1 mRNA upstream 127992 9931194 ~ 9949199 (+) True LOC120551200
XM_039788381.1 mRNA upstream 150866 9923421 ~ 9926325 (+) True nat9
XM_039788377.1 mRNA upstream 154124 9918121 ~ 9923067 (+) True syt15
XM_039788380.1 mRNA upstream 169252 9904130 ~ 9907939 (+) True timm23a
XM_039788743.1 mRNA upstream 179567 9884371 ~ 9897624 (+) True qki2
XM_039788490.1 mRNA downstream 3945 10084571 ~ 10090078 (+) False LOC120551228
XM_039788489.1 mRNA downstream 3945 10084571 ~ 10090078 (+) False LOC120551228
XM_039788491.1 mRNA downstream 3945 10084571 ~ 10089595 (+) True LOC120551228
XM_039788460.1 mRNA downstream 141697 10222323 ~ 10233271 (+) True trim8b
XM_039788492.1 mRNA downstream 167072 10247698 ~ 10255361 (+) True sfxn2
TU286128 other upstream 12065 10062785 ~ 10065126 (+) True G211164
TU286110 other upstream 14489 10053261 ~ 10062702 (+) True G211151
XR_005637867.1 other upstream 178682 9884371 ~ 9898509 (+) False qki2
XR_005637868.1 other upstream 178682 9884371 ~ 9898509 (+) False qki2
TU285955 other upstream 500773 9573115 ~ 9576418 (+) True rpl38
XR_005637923.1 other downstream 135739 10216365 ~ 10216479 (+) True LOC120551818
XR_005637921.1 other downstream 136482 10217108 ~ 10217221 (+) True LOC120551816
unassigned_transcript_1164 other downstream 283206 10363832 ~ 10363913 (+) True trnal-aag_10
TU286340 other downstream 375613 10456239 ~ 10460499 (+) True G211301
XR_005637805.1 other downstream 483626 10564252 ~ 10621412 (+) True usp54b

Expression Profile