RNA id: XM_039788594.1


Basic Information

Item Value
RNA id XM_039788594.1
length 5389
RNA type mRNA
GC content 0.55
exon number 38
gene id abca5
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 4118852 ~ 4160298 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGTAGCGACGTAAAGAAACGGGAGAATTCGTTTTAGCGGGGTTTACTTGACATAAAACCAAATGTAATGTAAGGCCGTTGAACCACACGTTGAGGAAAGATATGACTTAATGTATTTCATACCTGAGGCCAGCATTAGGGAGACTACTTCTCGTCCGTACGTCATCCAGATGAGGCATGCTGGAAGTATGCAGCCCATGTATAGGAGAGATGCTGGAGTCTGGCACCAAACAAAGAGTCTTCTCTACAAGAATCTGCTCATCAAATGGAGGACCAAGCAACAGAGTCTTCAGgAACTGATCCTACCCCTGCTACTGTTGGGTCTCCTGGTACTCATCAGCACTGTGAATCCTCACGTTTATTATGGAGGCATCAGCACTATGGAGCTGGAGCGCGAAGACCACTTCTTCAAGGGCCTGGGCTACACACCCATCACTAACGTCACCAACCACATCATGGAAGAGGTGGCCCAGGAGATGCACCTCCAGGATCATCTGGAGATGTTTGCCAGCGAGGAGGACCTGGAGAACGCCAGTCTGTATGAGCCTTCCAGCTACGTCGGTGTTGTGTTCACGGACAGCGCTGCCACGTCGTACAGGCTGCGCTTCCCCTACAACCAGCTGCCCTTACCCAGCGATTACACAGAATCTATCGCCAACTGTTTCACCAGCTCGGTGAACTGCAGAGCAGCTAATTACTGGTACTCTGGCTTCATCCGCCTCCAGTCTCTGATCGATGCAGCTATCATCCAGATGCAGACGAAGCGCTCAGTGTGGAGCGAGATGGACCTGAAGGTCGTAATGATGGGTCAGCCGGGCTCGGTGGAGGTGGAGAAATTCCCCCACGCCCTCATCTCCATCTACCTGGTCCTGGCCTTCACGCCCTTCGTCACCTTCCTCATCGTCAACGTGGCGGCGGAGAAGGAGCATCGCCTCAAAGACACCATGACCATGATGGGGCTCTACAAACAACCCTtctGGTTGTCATGGGGCCTCCTGTACGCCGCTCTGGTGACCACCATGTCCGTCCTGATGTCCATCATCGCTACGTACACGGCCCTGTTCCCCAACAGTGACTTCTTTGTCGTCTTCCTTCTCATCTTCCTCTATGGGATATCATCGatCTTTTTCTCCTTCATGCTGACTCCGTTATTTAAGAAGCCCAAGTTTGCCAGCACGGTGGGCTCCATGCTGACGGTGGTGTTTGGCTGCCTGTCACTCTTCACCGTGCTGATGAAGGACTTCCCGCAGCCGCTGGTCTGGCTTCTCTGTCTGCTCTCCCCCAGCGCCTTCTCAATCGGGATCGCACAGGTGGTTTACCTGGAGGCCCAGGGAGACGGTGCTGTGTTTTCCTCCCTGGCCAACGGCCCTCATCCTCTTTACGTGCCCCTGCTCATGCTGGTTGTGGACTGCATCCTCTACCTTCTGTTGGCTGTCTACCTGGACCAGGTCCTgcctgGGGAGTTTGGAATGAGGAGGTCCTTGGTGTACTTCCTGAAGCCCTCCTATTGGTCCAAACGCAGTAAGCGCTACGTTGAAGTGAACTCTGTGTACGATGCAGAGGCGAACGGCGCTCCTGCTGGGGACGAGTCAGTCGAGCCTGTTTCGCCGGAGTTCAGAGGGAAAGAGGCCATCCGCATCAATAACATCCAGAAAGTGTACAAAGAGAAGGGCAACGTGGTGGAGGCTCTCAGAGGTTTGACGTTTGACATCTACGAGGACCAGATCACGGCTTTGCTGGGACACAGCGGGGCCGGAAAGACCACCCTCATGAACATCCTGTGTGGCATCTGCCCGCCCACTAACGGCTCGGCCACCATCTACAACTCCCCCGTAGCAGAGATCGCAGACGGGCCTGAAATGAAGCAGCTGGTGGGAATTTGCCCCCAGTTCAACATCATCTTTGATGTGCTCACTGTGGAGGAGCACCTCAGGATATTCGCAGCCATCAAAGGGATCCCGCCCTCCAACATCGATGCTGAGGTTACCAAGGTGCTGAAGGATCTGGACTTGGAGAAAATCATGACTGCTCAGGCCAAGAATCTGAGCGGAGGCCAAAAGAGGAAACTCTCCGTGGGTATCGCCATTCTCGGAGATCCTAAGATCCTGCTCTTGGATGAGCCCACAGCGGGCATGGACCCCTGCTCCAGACACCAGGTGTGGTCGCTGCTGCAGAGCCGCCGAGCCGGCAGAGTCACGGTCCTCAGCACCCACTACATGGACGAGGCGGACATTCTTGCCGatCGCAAAGCTGTGATCTCTCAGGGACAGCTGAAGTGCGTCGGCTCTTCTCTGTATCTCAAGATCAAGTGTGGTGTTGGATATCATCTCAGAATGTCTATCAACGACGGATGTGAAGCTGAAAATATCACGGCGCTGATCACGCAGCACGTTCCCAAGGCTACGTTGTCCCGCCAGCACAAGGCAGAGTTGACCTTCACGCTGCCCTTTGAGAGCATTGACACATTTTCAGGCTTGTTCTCGGAGCTCGACAGTCAACCCAAACTGGGAATTGCCAACTATGGGGTTTCCATGACAACACTGGAGGATGTGTTTCTTCGTTTGGAGTCCGAGGCTGAAGTGGACCAAGCTGACTACAGTGTGTTTAATCGGGAGCAGACCGAGGATGAATGTGACAACGCCTCTCTGGACGACACAGACCAGCGGCTGCTGACCTTCTCAGACAGCCAATCGGACGTGGTGTCGGGTCACGCTCTGTGGCAGCAGCAGTTCAGCACCGTGGCCTGGCTGCACATGCTCAACATGCGCCGGGAGAGGAAGGCCTTTGTTTACACCCTGACCTTGTTCTTGGTGTTTGTTGCTGCTGTGCTGGTCCTATCTCTGGCCACAGGAAACATCCAGATACACTCCCCGGGCCGTCAGTTTCTGCCCGTTTACCTCCTCAAAAGGAACCAGTCGCCACGGAGATACGCCACCAGCCTCCTGGTTCAGAACTCCACAGGCTCTGATATTTCTGACTTCATCCACAACCTGGAGTCTCAGGACATCCAAGTGGATATGATGAAACACAGCGACTACATGTCCGCAGCTCCCCACAGCGCCGCCATCAACGTCACAGGATCCAGCAagGGTTTCAGATACAGTGTCGCGTTCAACAGCACCACCGTTCACTCCTTACCCATGGCTGTCAATATACTAAGCAACGCTCTTCTGAAAGGTCTGAATGGTACTAAACCGATCAGAACCTGGACCAAACCATTTGATTATCAAATCCCGGATGCCATGTCCTACGCTCTGGTTTACATAGAGGCCATCATACTGGGAATGCTTGCAGCTGGAATGCCTGCGTATTTCGCAATGGACCACACTCGAGACCGAGAGATCAAGTGTCGCTCTACGCTGCGTATCTCCGGTCTGTTGCCGTCAGCCTACTGGTGCGGCCAGGCCGCCGTGGACATCCCCTTCTACTACCTCATCCTCTGCTCCATGAGCACCGTCCTCTTCTCCTTCCACTCTGGGAACCTGCTCACGTCCAGCAACCTCACCGCTGTGGTCCTGTGTACTGTTGGCTTTGGTCCAGCCGTGATCCTCTTCGCTTATGTGTTTTCTTTCGGCTTTGCCCGAGTCCAGAGCAACAGAGATTTCTTCTCTGTCATCTCCATGATGgtgtgtgtggtgtcagcCTCGCTGGTTCAGTTGTCCTTTGTGAACGACAGCCCTGGTTTGACCAGAAACCTGCACAACGCCTTGTGTTTCTTCAACCCTCTTTACCCTCTTATGGGCTGCCTCAACTGCATCACCAAGGCAACCTTCCTCCCCTCTCTGTACGAGGAGAACTTCTTGTGGAAGAACCTGCTCATTGCGGTTGTAGCTCCGTATCTCCAGTGCATCCTGCTGCTTTTCCTGCTCCGTTGGCTTGAGATCCGTTACGGTGGGAGGACGATGAAAAACGATCAGTTCTGCAGGATCTCATCCAAGTCAAAGCCCAAAGTGGAGAAAAATCCAGAAGAGGCGCTGAACGAGGATGAGGATGTTCAGATGGAGAAGGCCAGAGTGAGGGAGGCCCTCACCTGCCAGTCCTGCGAAGACAAACCCGCGGTGGTTGTGAGTAACCTGAGGAAGCAGTACAAGGGCAAAAGAGAAGGTTTTTCTCTGAACAAGAGTAGGAAAGTGGCCACAAAGAACATCTCTTTCTGTGTTCGCAAAGGTGAAGTTCTCGGACTGTTGGGCCCCAACGGAGCAGGAAAGAGCACCATCATGCACATGTTGTCAGGCGACACAGACCCCACTGCAGGCCAGGTGCTGATGGGGGACTATAGCACCGAGTTTCGTCACGTGGACAATCCTCTGGAACATGTGGGCTACTGTCCTCAGGTGAACCCTCTGTGGCCCCGGATCACCCTGCAGGAGCACCTGGAGATCTACGCTGCCATCAAGGGCCTGAAAGGACAGGACGTACCGGGGATCATCAAACGTGTGGTGAACGCTCTGGAGCTAAAGGACCACTTGAACAAACAGGCCAAGACCCTGTCAGCCGGCCTCAAGAGGAAGTTGTGCTTCGCCTTGAGTATGATCGGGAACCCTCAGATCGTTTTACTGGATGAGCCGTCATCTGGGATGGATCCCAAGTCTAAACAGCGCATGTGGAGAGCCATACGTGCTGCGTTCAAGAACCGTCAGCGGGGAGCCGTCCTCACCACGCACTACATGGAGGAGGCGGAGGCCGTGTGCGACCGTGTGGCGATCGTGGTGTCCGGCCAGCTGAGATGTATCGGCTCCATCCAACATTTAAAAGGGAAATACGGTCGAGGTTACAGCTTGGAGGTAAAACTCCGAGAGGAGCTGACGGGGCTCCAGCCGGTGGCGCTGCTGCACAAAGAGATCCTCCGAATCTTCCCTCACGCTGCGCGGCAGGAGAGCTTTGCTACTCTGATGGTTTACAAGATCCCCATGGAGGATGTCAAATCACTGGCCAAGTCTTTCTCTGAGTTAGAGAGTGCCAAGCAAGCGTTCAACTTTGAAGAGTACAACTTCTCCCAGTCGACCTTAGAGCAGGTGTTCATGGAGTTCGCCAAGGAGCAGGAGAACGAGGAGGACGAGGTGGGCTCCCTCAGCACGACGTTCCAGTGGCAGCGTCTGCGCCAGGACGGCTCCGTCCCCGTCAACCCCACAGAGAGCATCGTGCACCAGCTCTGAACCCCAGCGGAGGGGGGGGTGGCCGACCGGGACAGAACCACCCCCCCTCCCTGAAACCTGTCAGGCCTCGACACCTGAGGGCTCAGACCAGCACTCGCCCGCTCCACGCAGACCCACGCCCACCGCCCTTAAAGGAACGGGACAGACGTGTGCGGGGggctcactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG:

id description
K05648 ABCA5; ATP-binding cassette, subfamily A (ABC1), member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637865.1 lncRNA upstream 31014 4085324 ~ 4087838 (+) True LOC120551338
TU284122 lncRNA upstream 76166 4021661 ~ 4042686 (+) True G209650
XR_005637753.1 lncRNA upstream 298232 3819101 ~ 3820620 (+) False LOC120550571
XR_005637752.1 lncRNA upstream 298236 3819101 ~ 3820616 (+) False LOC120550571
XR_005637749.1 lncRNA upstream 328455 3789446 ~ 3790397 (+) False LOC120550570
TU284176 lncRNA downstream 23275 4183573 ~ 4186720 (+) True G209684
TU284175 lncRNA downstream 25299 4185597 ~ 4186720 (+) False G209684
TU284177 lncRNA downstream 27795 4188093 ~ 4188482 (+) True G209685
TU284178 lncRNA downstream 31616 4191914 ~ 4192168 (+) True G209686
TU284215 lncRNA downstream 261763 4422061 ~ 4423044 (+) True G209706
XM_039788629.1 mRNA upstream 81 4107220 ~ 4118771 (+) True asb3
XM_039788630.1 mRNA upstream 81 4107220 ~ 4118771 (+) False asb3
XM_039788632.1 mRNA upstream 81 4107220 ~ 4118771 (+) False asb3
XM_039788631.1 mRNA upstream 81 4107220 ~ 4118771 (+) False asb3
XM_039788685.1 mRNA upstream 35350 4049249 ~ 4083502 (+) True LOC120551336
XM_039788595.1 mRNA downstream 11380 4171678 ~ 4183117 (+) True chmp6b
XM_039788596.1 mRNA downstream 35475 4195773 ~ 4307447 (+) False baiap2b
XM_039788598.1 mRNA downstream 35475 4195773 ~ 4307447 (+) False baiap2b
XM_039788597.1 mRNA downstream 35475 4195773 ~ 4287731 (+) False baiap2b
XM_039788600.1 mRNA downstream 35476 4195774 ~ 4305655 (+) False baiap2b
XR_005637866.1 other upstream 91354 3998373 ~ 4027498 (+) False LOC120551345
TU283994 other upstream 295601 3818853 ~ 3823251 (+) True LOC120550571
TU283997 other upstream 295601 3821899 ~ 3823251 (+) False LOC120550571
TU283964 other upstream 471855 3646009 ~ 3646997 (+) True G209514
TU283708 other upstream 1285178 2779741 ~ 2833674 (+) False G209344
XR_005637777.1 other downstream 1431038 5591336 ~ 5687896 (+) False LOC120550763
XR_005637869.1 other downstream 1923137 6083435 ~ 6092738 (+) False kctd2
TU284934 other downstream 2310358 6470656 ~ 6472155 (+) True G210266
TU285573 other downstream 3897445 8057743 ~ 8062269 (+) True dydc2
XR_005637922.1 other downstream 4039267 8199565 ~ 8199679 (+) True LOC120551817

Expression Profile