RNA id: XM_039788635.1


Basic Information

Item Value
RNA id XM_039788635.1
length 2516
RNA type mRNA
GC content 0.51
exon number 21
gene id LOC120551313
representative False

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 6961239 ~ 6993088 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACATGTGACTGTGCGGAATTTAGCCCACAAGTACGTGTTCACCTTGAAGAGGCATCCCAGTGTTAACCTCGGGTCCATTGCCTTCAGCCTGCCACAGCCACAACGGCACACAGagAAAATGGGCCGGCCTATCGATTGGACAAGAGGTTCAAGTTAGAGCCTACATGTTTGACAAGTCCAAACAGTGTATAAGCACCATGACGGTGGAAATTGACTTCCTGCAGAAGAAGAATGTGGACAGCAACCCCTACGATTCGGACCTCATGGCCAGCGAGTTCAGCAAGCACTTCAACAACCAGTCCTTCAGCGTCGGCCAGCAGCTGGTGTTTAGTTGCTGTGATAAGCTGTTTGCCTTGGTGATCAAGGATATTGAAGCGATGGACCCCAGCATCCTCAAGGGAGACCATGCCTCTGGCAAGAAACCAAAGATCGACATCGGTTTGTTGCTGGGAAACGGTCAGGTGATTTTTGAGAAGTCCGAGAGCTCATCCATGACCCTGGTTGGGAAAGCCAAGACCCGAGAGTCCCGTCAGTCCATCATCAGCCCAGACTGGAACTTTGAGAGGATGGGTATTGGCGGCCTTGATAAGGAGTTTTCTGACATCTTCCGTAGAGCCTTTGCCTCCCGAGTCTTCCCTCCAGACATAGTAGAACAGATGGgcTGTAAGCATGTGAAGGGAATCCTGCTGTACGGACCCCCAGGCTGCGGTAAAACCCTGATGGCACGACAGATTGGCAAGATGCTGAATGCCCGGGAGCCAAAGATCGTCAACGGCCCCGAGATTCTCAACAAGTACGTCGGCGAGTCCGAGGCCAACATCAGGAAGCTGTTTGCAGACGCAGAGGAGGAACAGAAGAGGCTCGGGGCGAACAGCAGCCTTCACATCATCATATTTGATGAGATCGACGCAATCTGTAAGCAGCGTGGCAGCATGGCGGGCAGCACCGGAGTCCACGACACCGTGGTCAACCAGCTGCTGTCCAAGATAGACGGAGTGGAGCAGCTCAACAACATCCTGGTCATAGGTATGACCAACAGGCCCGATCTGATAGATGACGCCTTGTTGAGGCCAGGAAGACTGGAGGTGAAGATGGAGATTGGGTTACCGGATGAAAAGGGCCGCATTCAGATTCTCCACATCCACACTGCAAAGATGCGTCAGCACAATCTGCTGGCCAGTGACGTAGACGTTAAGGAGCTGGCAGTGGAGACTAAGAACTACAGCGGCGCCGAGCTAGAGGGCCTGGTCAGGGCTGCACAGTCCACTGCCATGAACAGGCATATCAAGgccAGTAACACAGTGGAGGTAAACATTGAGACGGCAGAGAAGCTGGTGGTCAGCAGACTTGACTTTATAGGCTCACTGAATAACGACATCAAACCTGCGTTTGGTACCAATCAGGAGGATTATGCCAGCTACATCATGAACGGGATAATCCGATGGGGTGACCCGGTGTCAGCGGTCCTAGAGGACGGGGAGCTGCTGGTGCAGCAGACGAAGAACAGCGAACGCACACCGCTGGTCTCTGTGCTACTGGAGGGCCCACCTAACAGTGGAAAAACAGCGCTGGCTGCTAAGATCTCTGAAGAGTCCCAGTTCCCCTTTATCAAGATCTGCTCCCCCGACAAGATGATCGGACACTCGGAGATCGCCAAATGCCAAGCTATCAAAAAGATATTTGAAGATGCCTACAAGTCCCAGCTGAGCTGCGTGGTTGTGGATGACATTGAACGTCTGTTAGACTACGTCCCAATTGGCCCTCGTTTCTCCAACCTGGTGTTACAAGCTTTACTGGTGCTGCTGAAGAAACCTCCTCCAAAGGGTCGTAAGCTGCTGATCATCGGCACCACAAGTCGCAAAGACGTCCTACAGGAAATGGAGATGTTGGATGCTTTCAGCACCACCATCCACATTCCCAACATCTCAAGGGGAGAGCAGCTGGTCGAAGCCCtggagCTGCTGGGCAGTTTTCAGGATGTGGAGCGTGCCAGCATAGCTAAAGCTGTGAAGGGCCAAAATCTGTGGATCGGCATAAAAAAGTTGCTCATGCTGATTGAAATGGCCGTGCAGATGGAGCCTGGCTACAGAGTTAGCAAGTTTCTGCGTCTGCTGAAGGACGAAGGAGCACTGGGTTCTGATAAGTTTGTGGCAATCTAGACTCAGTGGAGCCACATAGTGAAAAAGAGGGATCCTTCAACGTCGCTGAGGAACGGGAAGCCTGAAAGAGGCTGGCAGGAGGAAGCAAGCGAGACAACgtttccatctctctttctgcaTCCTTCCCTCCCATCCCTGAAGCTCTGTGCACTTCTCTCTGCACTGCAGCTTTCTGAAACCAGGCAACATCCTCCTCTTCAGCACTATGTGAACATGTAAAATAGGAGAAGTAAGCCGTGTTTGTGGTATCTGTGTATATTGTATTTGCCGAAGACTAGTGCTGTAATCTCCATGTGATGCCCCAAGCACTCCatcagttatatatatattatattatatatatatatatataaaaat

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285266 lncRNA upstream 4588 6960204 ~ 6960437 (+) True G210523
TU285265 lncRNA upstream 5410 6957395 ~ 6959615 (+) False psmd11b
TU285240 lncRNA upstream 23793 6940371 ~ 6941232 (+) True G210505
TU285174 lncRNA upstream 152053 6720237 ~ 6812972 (+) False G210449
TU285285 lncRNA downstream 44708 7037796 ~ 7041379 (+) False ormdl3
TU285296 lncRNA downstream 55376 7048464 ~ 7072516 (+) True G210544
XR_005637793.1 lncRNA downstream 153333 7146421 ~ 7264824 (+) True LOC120550855
TU285294 lncRNA downstream 316804 7309892 ~ 7311059 (+) True G210542
TU285295 lncRNA downstream 326163 7319251 ~ 7326748 (+) True G210543
XM_039788992.1 mRNA upstream 4949 6951067 ~ 6960076 (+) True psmd11b
XM_039788993.1 mRNA upstream 4949 6951067 ~ 6960076 (+) False psmd11b
XM_039788246.1 mRNA upstream 28216 6819158 ~ 6936809 (+) True myo1d
XM_039787940.1 mRNA upstream 153596 6802667 ~ 6811429 (+) True pdk2a
XM_039787782.1 mRNA upstream 315235 6632297 ~ 6649790 (+) False osbpl7
XM_039788587.1 mRNA downstream 37730 7030818 ~ 7034425 (+) False ormdl3
XM_039788585.1 mRNA downstream 37731 7030819 ~ 7043208 (+) True ormdl3
XM_039788586.1 mRNA downstream 37731 7030819 ~ 7043208 (+) False ormdl3
XM_039787751.1 mRNA downstream 271758 7264846 ~ 7302723 (+) False LOC120550851
XM_039787754.1 mRNA downstream 271758 7264846 ~ 7302723 (+) False LOC120550851
TU284934 other upstream 492870 6470656 ~ 6472155 (+) True G210266
XR_005637869.1 other upstream 872287 6083435 ~ 6092738 (+) False kctd2
XR_005637777.1 other upstream 1277129 5591336 ~ 5687896 (+) False LOC120550763
XR_005637866.1 other upstream 2937527 3998373 ~ 4027498 (+) False LOC120551345
TU283997 other upstream 3141774 3821899 ~ 3823251 (+) False LOC120550571
TU285573 other downstream 1064655 8057743 ~ 8062269 (+) True dydc2
XR_005637922.1 other downstream 1206477 8199565 ~ 8199679 (+) True LOC120551817
unassigned_transcript_1162 other downstream 1608090 8601178 ~ 8601248 (+) True trnag-ccc_1
XR_005637919.1 other downstream 2049558 9042646 ~ 9046468 (+) False LOC120551795
TU285955 other downstream 2580027 9573115 ~ 9576418 (+) True rpl38

Expression Profile