RNA id: XM_039788725.1


Basic Information

Item Value
RNA id XM_039788725.1
length 2008
RNA type mRNA
GC content 0.55
exon number 14
gene id LOC120551345
representative False

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 3998373 ~ 4028282 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggGATTTTGCGTGTAACTTTACGCTCGTGCCGGACAGCTGCCACCACTGGACTCGGACTGAGCCGAACTGTCGTTCCTGTGATGCCCCAGGGCGGGCTGAGCTGGTCAGGGTTGCGATGCCTTATGTGGACCGACAGAATCGCATCTGCGGCTTCCTGGACATCGAGGAGAATGAGAGCAGCGGCAGGTTCCTGCGCCGATACTTCATCCTGGACACTCAGCAGGGCAGCCTGCTGTGGTACATGGACAACCCACAGAATCTGCCTAAAGGTGCGGAGAAGGTGGGATCTCTTAAACTCACCTACATCTCCAAGGTCAGTGATGCCACCAAACTCAGACCAAAGGCCGAGTTCTGCTTTGttATAAATGCAGGAATGAGGAAGTTTTATCTGCAGGCCAATGACCAGCAGGATCTGGTGGAATGGATCAGCGTTCTCAACAACGCCACCAAGATCACTGTGCCAAAGCCAGGCGAGGGCCACGCCGGCCACACAGAGACTCCCCAGGAAGTACTTGGAGCCATGAAACAGGTCTCCTACAAGACTGAAATCATAGGTGGAGTCCCTATCATCACTgctacacaggaGCAGGGGGAGGGGCATAACGAGGCGGAGCGTGGGGGCTTGAAGCGAGGTCAGAATCACCTGCCCTACTACCTGTCCAGAGGAGCGCAGGACCAGGCCATCATCAAGGCCGGATACTGTGTCAAACAGGGGGCTCTGATGAAGAATTGGAAGAGGAGGTACTTCATGCTGGATGAAAACGCTGTCAGCTACTACAAATCTGACCTGGAGAGGGAGGCGCTGAGAGTCATCCCGCTGAAGGAGATCCACAAAGTGCAGGAGTGCAAACAGAGTGAGCTGATGATGAGGGACAACCTGTTTGAAATGGTCACAGGCTCCAGAACTTTCTACATACAGgcTGACAGTCCAGAGGACATGCACAGCTGGATTAAGGCCATCTCAGGGGCGATCGTTGCTCAGCGCGGCCCCGGACGCTCCGCTAACTCTGTCCGTCAGGCCAGGAGGCTGTCCAGCCCTTGTATACAGAGCGTTCCTGACTCCCGGCAGAACTTCGCCAAACCAAAGGAACGCAGCGATCACTCCTCATCCTCTCCGACATCCTACTCCACCTTCTACTACCCCTGTGGCCCGGAACCACACCACCCACAATCCTCCTCCGTCGGCGCCACCGCGCGCCCTCAGCTTCACGCTGGACACGCACCACCAGGACAACTTCGTGGGCCTGCTCCCGTGGAGGCTAAGCGGCGTCCAGACCGTGATGATGCCTCTCCCGTCGGCGCGCTCCCGCCTGTCGCTGCAGGAGACGCTGCACTCTTCCAAATAACGGAGGAGGACGACGACGACGAATCCCCGTGGAAACAGCACAGCGAAATGGCCCAGTGGGGGTTCGCCGGCAGCCGTGGCGGGGACCAGCTGAACAGTCAAACCACTGAGAACACCGACCGGCAGATTACTCTGATTTGACGATGATGATcaacgagaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacttctacacAGGCTCCATGTGATGAGACTGCTCTGTGTGTTTCGGAAACTACCTGACTGGCTAAAATGAGCCGTCTACAAAAATTcctgggggccattttagtttgtacgtgtgtgcacatgtgaaaGAGGACCTTCTTCCGCTGCTGTTTTTTCGATAActctttacttgaaggtatctacataagagtgacatgacactgttatcaacacatgaaccctaaccgtAGCCGACCTGTCGGACGCCAGTGTGAGGTCAAAATGACGTAGCTCTCGCTGGCCTCGCCTGGATTTTGAGTGCGCGAGCAGAGGTCGTGCATGACAgtatttttttcagcggcggaaacaggaagcatggacgagttTGAGGGCAGCcagatgccaggactctcagagtgactgccagtctctctggtaaacttactgggttaagatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637753.1 lncRNA upstream 177753 3819101 ~ 3820620 (+) False LOC120550571
XR_005637752.1 lncRNA upstream 177757 3819101 ~ 3820616 (+) False LOC120550571
XR_005637751.1 lncRNA upstream 207698 3787973 ~ 3790675 (+) True LOC120550570
XR_005637748.1 lncRNA upstream 207698 3789446 ~ 3790675 (+) False LOC120550570
XR_005637749.1 lncRNA upstream 207976 3789446 ~ 3790397 (+) False LOC120550570
XR_005637865.1 lncRNA downstream 57043 4085324 ~ 4087838 (+) True LOC120551338
TU284176 lncRNA downstream 155292 4183573 ~ 4186720 (+) True G209684
TU284175 lncRNA downstream 157316 4185597 ~ 4186720 (+) False G209684
TU284177 lncRNA downstream 159812 4188093 ~ 4188482 (+) True G209685
TU284178 lncRNA downstream 163633 4191914 ~ 4192168 (+) True G209686
XM_039789000.1 mRNA upstream 54951 3942381 ~ 3943422 (+) True atoh1c
XM_039787170.1 mRNA upstream 166172 3829315 ~ 3832201 (+) True LOC120550572
XM_039789071.1 mRNA upstream 310596 3670590 ~ 3687777 (+) True LOC120551587
XM_039789069.1 mRNA upstream 377194 3587079 ~ 3621179 (+) True LOC120551583
XM_039788750.1 mRNA upstream 1464910 2526662 ~ 2533463 (+) True LOC120551356
XM_039788685.1 mRNA downstream 20968 4049249 ~ 4083502 (+) True LOC120551336
XM_039788629.1 mRNA downstream 78939 4107220 ~ 4118771 (+) True asb3
XM_039788630.1 mRNA downstream 78939 4107220 ~ 4118771 (+) False asb3
XM_039788632.1 mRNA downstream 78939 4107220 ~ 4118771 (+) False asb3
XM_039788631.1 mRNA downstream 78939 4107220 ~ 4118771 (+) False asb3
TU283994 other upstream 175122 3818853 ~ 3823251 (+) True LOC120550571
TU283997 other upstream 175122 3821899 ~ 3823251 (+) False LOC120550571
TU283964 other upstream 351376 3646009 ~ 3646997 (+) True G209514
TU283708 other upstream 1164699 2779741 ~ 2833674 (+) False G209344
TU283706 other upstream 1201238 2715645 ~ 2797135 (+) True G209344
XR_005637777.1 other downstream 1563055 5591336 ~ 5687896 (+) False LOC120550763
XR_005637869.1 other downstream 2055154 6083435 ~ 6092738 (+) False kctd2
TU284934 other downstream 2442375 6470656 ~ 6472155 (+) True G210266
TU285573 other downstream 4029462 8057743 ~ 8062269 (+) True dydc2
XR_005637922.1 other downstream 4171284 8199565 ~ 8199679 (+) True LOC120551817

Expression Profile