RNA id: XM_039788820.1


Basic Information

Item Value
RNA id XM_039788820.1
length 2334
RNA type mRNA
GC content 0.38
exon number 4
gene id LOC120551397
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 1298027 ~ 1303083 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTTTGACAAACAGACTGTGTTTTTTGTGAACAAACACTCGCTACTGATAACGCTGACGAGGACACGTGGCAGACACAGATTGGTCTCGTTCACCCACAGCGAGAAGTTTTCATTGGCCACTTCCTTGACTAAGTTGATGAACTCTGAACAACTGAACAACACTATACAGAAGTTAAACTTTCCTGCTGAGTCACAACGTTCATCAAATACCTCAGACGCTTTGGTACACGGCACCTTTCCAGCAAGCAAGGGCACCTTCAGCTGCAGGGGGCGAAGTGCTATGGATATTCCACATGATGATGAACAAATTGcagaaattaaaaaagaacTGCAAACCAACGGATCCTCTTCAGCCACTGCAAAGATCCAGACTTATTTGGACAAACTGGATAATGTTCAGCTAAATATTGCGATCACAGGAGAGTGTGGTTCTGGTAAATCCACCTTTGTTAATGCTTTTAGAGGCATAGACAACAGCGATAAGGAAAGAGCTGCCCCTACTGGTGTTAAAGAAACCACCATAAAAGTTACACCATACCCCCATCCAAATTATCCCAATGTTACACTTTGGGATCTTCCTGGTATCGGCACCACCAAGTTTCCAGCTGACAAGTACCTGAAGCTTGTTGAATTCAAAAGGTATGacttcttcatcatcatctcagctgaTCGCTTCAGAGAAAATGATGTGAAGCTCGCTAAGGAGATtcagaagatgaagaagaagttATACTTTGTTCGCTCAAAGATTGACCACAACATACGTGATGAGGAAGAAACTCGGGGGTCAGAGTTCAACAAAGAAGAGACCCTTAAAGAAATAAGGGAGGACTGCATTCAAGGTCTTAAAGGACGTGTTGAGTCTCCAAAAGTCTTCCTGGTGTCCAGCCGTAAACTCCACCTGTATGATTTCCCTCTGTTACAGAAAACTTTTCAGGAAGAACTTCCTGCACACAAGAGGGATGCTCTGCTGTTGGCCTTGCCCAATGTCAGTCTTGAAATAAtcataaagaaaaaagaaactttaCAGGCAAGAATAAAGTACCTTGCTGCTGTGTCTGCACTCGGAGCAGCTGTACCAGTTCCTGGGCTTTCTTTTGCTGCTGATATCATCATGATGGTTTTTACCATTAGACAGTACCAAGTTACCTTTGGTCTTGATAGCGAGTCACTGCAGCGTCTTGCTCAGACTGTACGTGTGCCTTTGGATGAGCTTAAAGCAGTGATGACATCACCACTGGCTGGAAATGAAATAAGCAAAGATCTTATCATTAAGATACTGAGCTCTTCTGTGGCTTTCCTTTCATTGACAACAGCAGAGGAAGGGTCTAGATTTCTTCCAATTTTTGGAATCCCAGCAGCAATGGGCCTCTCTTTTCTCACCACATACAAATCTCTCAAAATGTTCCTCGACATGCTTGCTGAGGATGCACAGAAGGTACTTAAAAAGGCCCTGGGTTTGAACACCCCATTGTGATATCATAGATAGAttgatctttattgtcattgtgctcaAAGTGACTTTACCAGCTCTTCAGTAGATTTAGTAATAGTGACAAGGTTTTTGGTGGTGAGGTAGCAGCATAAGGGGTTGTTAGTGCAAAAAAGTTGTGCAATGTTTCAGTCTTTGGCGTTATGGGGAAGACAGTCGCCTTATGGGATCATTAGGTGATCATTTCAAACTTGGTCTGCAAAGCAAAGCCAAGACTTTGAGCAAATGATGATGCTAACGGTCTAAATACTGAATGTTaatctgaatgaaatgaaaggttttgaaaaatctaataaaatgtTCATTGACATTAGCCACAATTTGTGATTTTGTCGTAAcatgaaattatttgaaactaatgtGCTTGCACTTGTAATAAGAAAAGTATTTATATAGCTGATGTACTGCAATAGTTTTTCAAGTAAATGTaattatatagcctacattacaTTTAACCTGttctttgtattgtattttctgtatttagtattgttttattttagtttagtttacttTTGTTCTCTTTATGTACTGAAGCTTTCTtgagttttattattttgttttatcatTAAGTAAGGTTGTAATGTTCTTTGGATGGGAATTAATAtcgttttgttatgttttgtcAGTATGATGCTGAACTATTCAAACATTGTATAATATTTGTAAAAGtttgcaaattaaaaaaaattatgtaattatttttttacttgcACTTGATTGTTGCTGTTAGGATTTTGTAACTTCATGGTTGAATGaatggataaaagcatcagctaaatgtcaTGTGATGAATGTAATGAAGGCTTTTGAGTaatcaaataaaatgttcaTGAAATGA

Function

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component
GO:0005507 copper ion binding molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283012 lncRNA upstream 42350 1192295 ~ 1255677 (+) False lipf
TU283020 lncRNA upstream 71342 1209423 ~ 1226685 (+) True G208864
XR_005637874.1 lncRNA upstream 97854 1198922 ~ 1200173 (+) True LOC120551437
TU283025 lncRNA upstream 97889 1198922 ~ 1200138 (+) False LOC120551437
TU283021 lncRNA upstream 97924 1198922 ~ 1200103 (+) False LOC120551437
TU283062 lncRNA downstream 8973 1312056 ~ 1335340 (+) True G208885
TU283053 lncRNA downstream 24107 1327190 ~ 1328029 (+) False stambpl1
TU283063 lncRNA downstream 26055 1329138 ~ 1383544 (+) True G208886
TU283064 lncRNA downstream 29663 1332746 ~ 1333550 (+) True G208887
TU283065 lncRNA downstream 31899 1334982 ~ 1367880 (+) True G208888
XM_039788823.1 mRNA upstream 62205 1211728 ~ 1235822 (+) True lipf
XM_039788822.1 mRNA upstream 104806 1181045 ~ 1193221 (+) True ptenb
XM_039788845.1 mRNA upstream 208867 1043694 ~ 1089160 (+) False LOC120551414
XM_039788844.1 mRNA upstream 208867 1084225 ~ 1089160 (+) True LOC120551414
XM_039788854.1 mRNA upstream 248417 1043672 ~ 1049610 (+) True LOC120551421
XM_039788864.1 mRNA downstream 10118 1313201 ~ 1327465 (+) True stambpl1
XM_039788831.1 mRNA downstream 75568 1378651 ~ 1380831 (+) True LOC120551407
XM_039788857.1 mRNA downstream 82280 1385363 ~ 1398958 (+) True LOC120551423
XM_039788829.1 mRNA downstream 110705 1413788 ~ 1427061 (+) True LOC120551406
XM_039788839.1 mRNA downstream 127389 1430472 ~ 1437585 (+) True LOC120551410
TU283035 other upstream 92779 1204590 ~ 1205248 (+) True G208867
TU283000 other upstream 204430 1090547 ~ 1093597 (+) True G208852
TU282997 other upstream 238587 1058842 ~ 1059440 (+) True G208851
TU282854 other upstream 642807 654899 ~ 655220 (+) True G208768
TU282798 other upstream 747950 536938 ~ 550077 (+) True G208758
TU282870 other downstream 127426 1430509 ~ 1493181 (+) False G208777
TU283091 other downstream 162935 1466018 ~ 1571837 (+) True G208911
TU283086 other downstream 195364 1498447 ~ 1577370 (+) True LOC120550772
XR_005637782.1 other downstream 291398 1594481 ~ 1613738 (+) False LOC120550774
TU283626 other downstream 1029095 2332178 ~ 2334285 (+) True G209284

Expression Profile