RNA id: XM_039788829.1


Basic Information

Item Value
RNA id XM_039788829.1
length 1294
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC120551406
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 1413788 ~ 1427061 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGAGAGACACCATGAGACACTAGAGATATCAGAGACATCAAAGACAACAGAGCATCCAAATACACTGACATCAGGATCTTCATCTTCAGTTCAGCTGAAATCTGACCATGAAGctggtTTCAGTCGTCCTCCTCCTGCTGGCCCCCCTGTTGACCAGCTGCCAGCAGCTCATTCTGCCGTTGGACTGCAGTGACATTTATAGTAATGACAACAGCCGACCCAGTGGAGTGTACACCATCTATCCCATCGGACCCACGTCTGCTGTCCAGgtgtactgTGACATGGATTCAGAAGGAGGACGGTGGACGGTGTTCCAGAGGAGGATGGACGGCACAGTGAACTTCTACAGGGGCTGGGATCAATACAAGACCGGCTTTGGTATCGCTGCTGGAGAGTACTGGCTCGgtCTCCAGTCTCTCTTCTACATGACTCTGAGGAAAAAGTACGAGCTGCTGGTCGACATGGAGGACTTTGAAGGAAACAAAGTGTTCGCTCGTTACTCCTCATTCTCCATCGATGCTGAGTCCTCCGGATACACACTGCATGTTTCTGGATTCATTAATGGAGGAGCAGgAGACACCTTGACTTATCACAACATCACTTATCGTCACAATGGAATGAAGTTCTCCACCTTTGACAAAGACCAGGACACCTATGCTGGAGGGAACTGTGCCAGAAAATACCTGGGGGCGTTCTGGTACAGCAACTGTTTCGTTACAAATCCAAATGGTGTTTATCGTTGGGGGGCTGACAGCACTATCCCTGGTGTTGGAGTGCAGTGGAACCAATGGAAAGGTCGTAACTACTCCCTGAAGACCATCAGCATGAAGATCCGTCCTGTGCAGTAGTTCTCCAGGcgttctctttctcttctgatttctttctttttctctcattaAGCATTTAATCTCAGAACAGGTCTTATTTTCCTGAACCTAAACACAAGAAAACCAACTGAGTGTGTAAATCTTGTTACTGTCTGTGATGGCTTAAAGCAGTCGCAGCTCGCTGCAACATGGAAGAAAAGTCAGATGTGTCTCCAGTTGGGCGGCTGCAGCAGGAAAGTAGGGCCCATAATCTTTAAATGGAAACACATATATAGTCTGATCAGCTGTTAATCACTGCATGAACTGATAACACGAGtctaaaagagagaaagaagtaaagaaaatgaaaagtataaaaagatCTTTGCAGTTCAGGACAGCCAGTTGATGTTTGGTGGAGGTTTGAAACTGTAATGTGAATCTTTATCTGCTGTACGGTGACAATAAATAAGAAGCTGAGCATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283070 lncRNA upstream 23893 1356116 ~ 1389895 (+) True G208891
TU283063 lncRNA upstream 30244 1329138 ~ 1383544 (+) True G208886
TU283065 lncRNA upstream 45908 1334982 ~ 1367880 (+) True G208888
TU283069 lncRNA upstream 50097 1346805 ~ 1363691 (+) True G208890
TU283067 lncRNA upstream 71830 1335562 ~ 1341958 (+) True G208889
TU282871 lncRNA downstream 3448 1430509 ~ 1433152 (+) True G208777
TU283094 lncRNA downstream 64629 1491690 ~ 1492031 (+) True G208914
XR_005637781.1 lncRNA downstream 80280 1507341 ~ 1529819 (+) True LOC120550773
TU283096 lncRNA downstream 101250 1528311 ~ 1614871 (+) True G208916
TU283098 lncRNA downstream 121712 1548773 ~ 1550127 (+) True G208917
XM_039788857.1 mRNA upstream 14830 1385363 ~ 1398958 (+) True LOC120551423
XM_039788831.1 mRNA upstream 32957 1378651 ~ 1380831 (+) True LOC120551407
XM_039788864.1 mRNA upstream 86323 1313201 ~ 1327465 (+) True stambpl1
XM_039788820.1 mRNA upstream 110705 1298027 ~ 1303083 (+) True LOC120551397
XM_039788821.1 mRNA upstream 110705 1298029 ~ 1303083 (+) False LOC120551397
XM_039788839.1 mRNA downstream 3411 1430472 ~ 1437585 (+) True LOC120551410
XM_039788840.1 mRNA downstream 3411 1430472 ~ 1437585 (+) False LOC120551410
XM_039788841.1 mRNA downstream 34213 1461274 ~ 1464607 (+) True LOC120551412
XM_039788851.1 mRNA downstream 63101 1490162 ~ 1497667 (+) True LOC120551417
XM_039787607.1 mRNA downstream 126796 1553857 ~ 1592744 (+) True LOC120550771
TU283035 other upstream 208540 1204590 ~ 1205248 (+) True G208867
TU283000 other upstream 320191 1090547 ~ 1093597 (+) True G208852
TU282997 other upstream 354348 1058842 ~ 1059440 (+) True G208851
TU282854 other upstream 758568 654899 ~ 655220 (+) True G208768
TU282798 other upstream 863711 536938 ~ 550077 (+) True G208758
TU282870 other downstream 3448 1430509 ~ 1493181 (+) False G208777
TU283091 other downstream 38957 1466018 ~ 1571837 (+) True G208911
TU283086 other downstream 71386 1498447 ~ 1577370 (+) True LOC120550772
XR_005637782.1 other downstream 167420 1594481 ~ 1613738 (+) False LOC120550774
TU283626 other downstream 905117 2332178 ~ 2334285 (+) True G209284

Expression Profile