RNA id: XR_005637885.1


Basic Information

Item Value
RNA id XR_005637885.1
length 3861
RNA type transcript
GC content 0.52
exon number 22
gene id LOC120551485
representative False

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 12550577 ~ 12599464 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCAAGTTGAGCAGTTGAGAGTCCCGCAGCCGAACCATTGGTGCGTAATGGTGCACGACTGGACGGCAGATGTTTCACCACCGGGACACTCTGTCTCTGCACACTTTATCTGAACTCTTCcgacttttttttctcagcgTAGGCGTGCGTTAACTTGCTGTCCTAAGTTATATGTGGAAGGCAAGGgacgaagaagaaaaaaaaattgggctACCTCTTCAAACCGTCCCGGTTTTTACCGGAGAGTTGTCGTCATCAGCACCCCAGATATCCCCCCCCCCTTAGCTCCCTAAATGGATGGGGCAGTCTTGGTCTATGCAGTTCAGCACAGGCCAAATGATTGGAAACAACTTGTGAATATCCGTGAGTTTGGCGTCTAGAGGGAAACGCTCAGAAATGCACGGCTGCTTCGCTGGAGCTCAACTCTGAGGACTTTTCTCCTgcatttgtgcttttttttttttcaggaggaAGGACTCCGCTCAAAGTTTACAACAGAAAGGAAAACTCAGCGCTGAAGTGGCAGCTCTCACACTATAGCCCTCGCTATggattgtatgtatttattattgtgCTTTTCACTCAGTCAAGTATTTTTGGATCATGTTTTTGCTGCAGAAACACATGAAAAACTCTCTGGAAAGTTAAGTGAATATGGTCTTATCGTGCCATTCAGCACAGACTCCCGTGGCCGGTACATTTCTCACGTGGTCTCTGCTGGAAGTGGAAGTAAAGGtgctgctgatgctgatgcCGCCTCAGCCTCTGGCAGCAACCGAAGAAGGGTGGCCCGCGGTGCCCCAGAGATGCCCCCAGTCACCCCTGCCTCAGCGCAGCACTTGTTTTTCAATGTCACTGTGTTTGGGAAAGAACTGCACCTCCGCCTTAGGGCCAACAGGAGGCTGGTGGCCCCGGGGGCTTTTGTGGAATGGCAGGAAGACTTTTTGGAAAAGGCCAAGGAGCGTATCCACAGGGACTGTGTTTTCACTGGAGATGTGAGCGACATGCCGGAGGCCTCTGTGGCTATCAGCAATTGTGACGGACTGGCAGGTCTGATCCGGACTGATAATGGGGAGTTTTTCATTGAGCCCCTCGAGAAGGGCCAACAGGACGTGGAAGTGAAGGGGCGTGTCCACGTGGTCTACCGCAGGTCGGCCATCAAGCGAGAGACGGGCCAGCGGAGGGAGGACCTCCACAATGAAGTGGCAAACTTCGGGATCGCAGACCTCCCTGCGGCTCTGGATCTTGTCGAACATAAACTGTCTGAGTCCGAGCGCAAGAGGAGGCACGCGAAGAAAGACGACTACAACATTGAGGTGCTGCTGGCTGTGGACGACTCGGTGGTGCGCTTCCACGGCAAGGAGCATGTGCAGAATTATGTTCTCACGCTCATGAACATAGTTGATGAAATCTACCACGATGAATCTTTGGGAACCAACATAAATGTTGTCCTTGTTCGCATGATAATGGTCGGGTACCGACAGTCGATATGTCTGATCGAGCGTGGCAACCCATCCCGCAGCCTGGAGCAGGTGTGTCGATGGGCCAACACGCAGCAGCGCCGTGATCCTGACCACGCCGAGTACCACGATCACGCCATCTTCCTCACAAGGCAAGATTTTGGTCCCGCAGGTATGCAAGGTTACGCTCCAGTTACAGGGATGTGCCACCCACTGAGGAGCTGCACTCTGAACCACGAGGACGGCTTCTCCTCCGCCTTTGTGGTTGCTCATGAAACCGGCCATGTGCTGGGCATGGAGCATGATGGCCAGGGAAATCGTTGTGCCGATGAGACCAGTATGGGCAGCATCATGGCACCACTTGTCCAGGCAGCTTTCCACCGCTATCACTGGTCACGTTGCAGCAAGCAGGAGCTCAATCGATACATCCACTCCTATGACTGCCTGCTGGATGATCCCTTTGAACACAAGTGGCCTAAGCTTCCTGAGCTCCCTGGAATAAATTATTCAATGGACGAGCAGTGCCGCTTTGATTTTGGTGTCGGTTATAAAATGTGCACTGCTTTTCGAACCTACGACCCTTGCAAGCAACTGTGGTGCAGTCACCCAGACAACCAGTACTTTTGTAAAACCAAAAAAGGTCCTCCGGTGGATGGAACAGAGTGTGCACCAGGAAAGTGGTGCTTCAAGGGCCATTGCATCTGGAGATCCAGCCAGCAGCCTCAGGGCCACGATGGGAGTTGGGGCTCCTGGTCCAAATTCAGCTCTTGCTCCAGGACATGTGGAGGTGGAGTTCGCTCCCGCAGCAGACAGTGTAACAACCCACCgCCTGCCTACGGTGGCCGAGATTGCCCCGGCTCTGCTTTTGACTACCAGATGTGCAACACGGAGGAGTGTGCTGGCCCTTACGAGGACTTCCGTGCTCAGCAGTGCATCCAAAGGAGCAACAAATACCACAACAACATCAAGCACACCTGGCTACCGTATGAGCACCCAGATGAGGCCCGTAAGTGTGAGCTGAGCTGTACATCAAAAGAAACAGGAGAGGTGGTGTTCATGAACCAGGTGATGCACGATGGGACCCGCTGCAGCTACTCAGAGCCCTTCAGCGTGTGCGCCCGAGGAGAGTGTCTGCATGTGGGCTGTGACAAGGAGGTTGGCTCGTACAAACAAGAGGACAAATGTGGAGTGTGCGAGGGTGACAACTCCCACTGTCGCACCGTGAAGCTGACACTCACCAAGACGCCCAAAAAGAATGGAATGCTGAAAATGTTCGACATCCCAATAGGAGCCCGCCACATAGTTATCGAAGAGAACGAGACTTCCCCTCATATAATTGCTGTGAAGAATCAAGTTACTGGAAACTTCATACTGAATTCAAAAAGTGAAGACGCTGAAACAAAGACATTCATCGAAAATGGTTTACAGTGGGAGTATTTACTCGATGGCGGAAAGGAGACGCTAAAAACAACTGGTCCTCTGCATGAAGGCATCGTAGTGCTGGTCATTCCCCAGGAAGAAGATGCAAAGATCAGCCTGACATATAAGTATATCATACATGAGGACCTGTTACCGCTTATTACCAACAACAATGTTCTTCTGGCTGAACTGGACACCTATGAGTGGGCACTGAAGAGCTGGTCTCAGTGCTCCAAACCCTGCGGGGGAGGCATACAGTACACAAAATATGGATGCAGGAGGAAAAGTGACAGTCGTTTAGTACATCGAAACTTTTGTGAAACCAGCAAAAAGCCCAAACCCATTCGCAAACGCTGCAATGTCCAAGAGTGCAACCAGCCCACGTGGGTCGTGGAAGAGTGGAGTCCCTGCAGTAAGACCTGCGGGAAGCTTGGCTACCAGACCAGGGCGGTGCAGTGCATGCAGGCGCTTCACAACGGCACCAACAGGCCCGTCCACAGCAAACACTGCATTGAGAATCGGCCGGAGACAAGGAAGGCCTGTAACCACACAACATGCCCTGCCCAGTGGAGGACAGGGGCGTGGTCTCAGTGTTCGGTGACCTGTGGCGAAGGGATTCAGCAAAGACAGGTGGTTTGCAAGGCCAGCGACAACACCATTGGAGAATGTGAGGGCGAGAAGCCGGAAACAGTCCTCATTTGCAAACTAAGTTCTTGTCCAGGTGAGATCCACAAACATGACAGCCAGTGTCTCCTCTCACCGTTGAAACAATGGAAAACGCCACAATAAAAGACGAAGCTGTACACCAAAGGGCTCATGAAAACCCTGTCCACAAAATCTCTTCAAATGAGCCATGTTTGGGGGATAAATCAATTTTCTGTCAAATGGAGGTTCTTGCCCGATATTGTTCCATCCCTGGATATAATAAGCTTTGCTGTGAGTCTTGCAACAAGAAGGAAAACTTTGCCACACATTCTCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU287145 lncRNA upstream 111924 12399904 ~ 12438653 (+) False G211864
TU287143 lncRNA upstream 148970 12399904 ~ 12401607 (+) True G211864
TU287042 lncRNA upstream 386123 12163345 ~ 12164454 (+) True G211791
TU287033 lncRNA upstream 391324 12120008 ~ 12159253 (+) False G211785
TU287031 lncRNA upstream 391324 12148840 ~ 12159253 (+) True G211785
TU287227 lncRNA downstream 20334 12617355 ~ 12624695 (+) True G211919
TU287266 lncRNA downstream 213031 12810052 ~ 12810261 (+) True G211954
TU287268 lncRNA downstream 214661 12811682 ~ 12812527 (+) True G211956
TU287273 lncRNA downstream 219869 12816890 ~ 12817140 (+) True G211961
TU287275 lncRNA downstream 221484 12818505 ~ 12818713 (+) False LOC120551603
XM_039787483.1 mRNA upstream 12768 12500234 ~ 12537809 (+) False pald1a
XM_039787486.1 mRNA upstream 12952 12490620 ~ 12537625 (+) False pald1a
XM_039787487.1 mRNA upstream 12952 12494256 ~ 12537625 (+) False pald1a
XM_039787488.1 mRNA upstream 12952 12496871 ~ 12537625 (+) False pald1a
XM_039787485.1 mRNA upstream 12952 12498062 ~ 12537625 (+) False pald1a
XM_039787278.1 mRNA downstream 38176 12635197 ~ 12645610 (+) True LOC120550644
XM_039789091.1 mRNA downstream 123814 12720835 ~ 12827609 (+) True LOC120551603
XM_039787865.1 mRNA downstream 231111 12828132 ~ 12837177 (+) True LOC120550911
XM_039787686.1 mRNA downstream 255740 12852761 ~ 12861673 (+) True anxa11b
XM_039787685.1 mRNA downstream 256112 12853133 ~ 12861673 (+) False anxa11b
TU287023 other upstream 462442 12087685 ~ 12088135 (+) True G211777
XR_005637797.1 other upstream 1149999 11363355 ~ 11400578 (+) False LOC120550876
TU286461 other upstream 1623351 10922448 ~ 10927226 (+) True cript
TU286458 other upstream 1643260 10902704 ~ 10907317 (+) False LOC120551799
TU286436 other upstream 1746605 10801340 ~ 10803972 (+) True G211354
unassigned_transcript_1166 other downstream 13800 12610821 ~ 12610902 (+) True trnal-aag_11
TU287259 other downstream 123837 12720858 ~ 12809117 (+) False LOC120551603
TU287481 other downstream 783195 13380216 ~ 13380934 (+) True G212108
TU287720 other downstream 1405026 14002047 ~ 14032589 (+) False G212254
TU287731 other downstream 1405026 14002047 ~ 14032589 (+) False G212254

Expression Profile