RNA id: XM_039789031.1


Basic Information

Item Value
RNA id XM_039789031.1
length 1673
RNA type mRNA
GC content 0.49
exon number 2
gene id LOC120551547
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 8469606 ~ 8473392 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ataaataaatctgattaATGTATCCAAATAGAGCAGCAGATGTATATCCTTATTTTAGGAAAGGGTCCAAAAGAGACCAGGTTTGCTCCCCAGATACGGTTTATGTTTTGTGATTATCTGTTTAAGCCCATAATCCCTCTCTAATCAGGAATATTCCATATCTGCTCACAGAGAATTTAGTGAAATTACATCAATATCAGGTTCTTTTGGCAGGAAGAAGGTAACCATGCCTTTCAGTGTGAGTGATCAAACTCTGATCTAAACCAAAGATGCCTGTCCATGGCTGCACAATGCTCGGTGTGCTGCCTCTGCTGCCTCTTCTAAACACGGTGTTGGGCTTCCAGCTGTGTCCCAGCCTCTGCCTATGCTACGAGTCCTCTGACCTGGTGGACTGCCGGTCTCGTGGTCTGGTCCGGGTCCCTCCCAGTGTCCCCCACGGCACCTGGCTGTTGGATTTCAGTGGAAACAAGCTGACTGAGGTACACACCAGATCCTTCGTGGGGCTGTGGTCACTGAAGATCCTCCTAATGTCCAACAACAGCATCCAAACTCTGCAGCCACAGTCTCTGTCGTCACTGCGGTTTCTGGAGAGGCTGGACTTGAGTTTTAACCGGCTGCGTTGGCTCCCTCAGGGCTTCTCTCAGAGTCTGCCCTCCCTCCAGGAGCTCCGGCTGGACCACAACCTGCTGCAGCACCTGGACTCTACCTCGCTGGGTGATTTTGAAAACCTGAGGAAACTGGACCTCGGTTACAACCGCATCCAGGCGATTGATGTCAGGGCTTTCAGCAGCCTGTATCGGCTGAGCCTCCTCAACCTGGAAGCAAACAGGCTGAATGTGCTTAAAGATGGCCTGCTTAGCAGGCAGCGACGCCTGGAGGTGCTGCTGCTCAGCCACAACAACATCTCGCTGATCGAGAACGAGGCTCTGGCTCCTTTGCAGAGTCTGACTCTGCTGGGTCTTAAGGGAAACCAGCTGGAGCACATCAGGTTCAAGACCTTCCTGAAGCTCCAGACCACCACCCACCTTCAACTATCCTCCAACCACTGGACCTGTGACTGCGAGCTGCAGCGCGTCTTTGGCAAGATCCAACGTGTTCAGCATCTGCATGTGGACGACTACAAGGACATCATCTGCCACGCTCCTGCTCAGCATGCCGGGAGCTTCCTGGAATCACTGGACAGCCAGCTGTGTATCACTGAGACAGCATCTGTGCTGGTCATCACCATCACTGTGGTGCTGGCTGTGATTGGTACCCTGGTCAAAGGGGAGCACAACTGGAAGACGAACAAACAAGCTGTAAGTGATACAGAGCCAGAAAGATAACCAATCTCCCCCTGAGCCTATCAGTGCTGGCCTGGTGTACCTTCTCCCCGACCTCAGCAGGGAGTAAATGCTGTTACCTGAGTGGTTTGGATGTTTAATGATTCTCCTAGCCGTTTTCTTGAAACACCTGGTGTAAATATCCATTAGACAGGGTATGTCCGCctattgtatgtttttttacatactatactatgactttttaatggcattttacaattttttttattttattttcatgactatttcaacatatggctttttttatgtCCTACTATACCATTTAACAGGCTTTTTACAGGGTttatacgttttgaaaaaacctggaaaagttatggaatttgaaaaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285696 lncRNA upstream 11403 8456750 ~ 8458203 (+) True G210837
TU285646 lncRNA upstream 268120 8201281 ~ 8201486 (+) True G210799
TU285633 lncRNA upstream 290453 8171115 ~ 8179153 (+) True G210790
TU285631 lncRNA upstream 310567 8158836 ~ 8159039 (+) True G210789
TU285601 lncRNA upstream 401569 8067717 ~ 8068037 (+) True G210766
TU285714 lncRNA downstream 23221 8496613 ~ 8497654 (+) True gngt2b
TU285725 lncRNA downstream 59596 8532988 ~ 8567487 (+) True G210862
TU285729 lncRNA downstream 107613 8581005 ~ 8625108 (+) True G210866
TU285825 lncRNA downstream 200614 8674006 ~ 8674260 (+) True G210938
TU285867 lncRNA downstream 495691 8969083 ~ 8971699 (+) True G210964
XM_039789033.1 mRNA upstream 997 8459854 ~ 8468609 (+) True lsm12b
XM_039789032.1 mRNA upstream 997 8459856 ~ 8468609 (+) False lsm12b
XM_039788527.1 mRNA upstream 17188 8386130 ~ 8452418 (+) False tanc2b
XM_039789254.1 mRNA downstream 23270 8496662 ~ 8497628 (+) False gngt2b
XM_039789089.1 mRNA downstream 26338 8499730 ~ 8506507 (+) True si:ch1073-13h15.3
XM_039788410.1 mRNA downstream 70143 8543535 ~ 8564587 (+) True col1a1b
XM_039788206.1 mRNA downstream 103270 8576662 ~ 8596015 (+) True LOC120551063
XM_039787391.1 mRNA downstream 128454 8601846 ~ 8609664 (+) True fbxw10
XR_005637922.1 other upstream 269927 8199565 ~ 8199679 (+) True LOC120551817
TU285573 other upstream 407337 8057743 ~ 8062269 (+) True dydc2
TU284934 other upstream 1997451 6470656 ~ 6472155 (+) True G210266
XR_005637869.1 other upstream 2376868 6083435 ~ 6092738 (+) False kctd2
XR_005637777.1 other upstream 2781710 5591336 ~ 5687896 (+) False LOC120550763
unassigned_transcript_1162 other downstream 127786 8601178 ~ 8601248 (+) True trnag-ccc_1
XR_005637919.1 other downstream 569254 9042646 ~ 9046468 (+) False LOC120551795
TU285955 other downstream 1099723 9573115 ~ 9576418 (+) True rpl38
XR_005637867.1 other downstream 1410979 9884371 ~ 9898509 (+) False qki2
XR_005637868.1 other downstream 1410979 9884371 ~ 9898509 (+) False qki2

Expression Profile