RNA id: XM_039789032.1


Basic Information

Item Value
RNA id XM_039789032.1
length 1149
RNA type mRNA
GC content 0.45
exon number 5
gene id lsm12b
representative False

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 8459854 ~ 8468609 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACGTCGTTTTACGTAAGGCAGGCGCTCCGGTTTCCTGGCGGAGAAGATGGCGGCTCCTGGACCGGGGGAGTATTTCAGCGTCGGGAGCCATGTCTCTTGCCTCACCTGCTTGGGCCAACGTCTACAAGGAGAGGTGGTCGCGTTTGACTACCAGTCCAAGATGTTAACTCTGAAATGTGCTTCCTCCAGCGGTAAGCCAAACCTCAACGACGTCATCCTGATCAACTTAGCCTATGTTTCTGATGTGGACATAATTAATGACCGCACTGAGACTCCACCCCCACTAGCATCACTGAATGTTAGCAAGCTTGCCAATCGAGCACGGACAGAAAAGGAGGACAAGCTGTCCCAAGCCTATGCAATCAGTGCTGGGGTTTCTGTGGAGGGCCAACAGCTATTCCAGACTATTCACAAAACCATCAAAGACTGTAAATGGCAGGAGAAGAACATTATTGTGATGGACGACGTTGTAATCTCCCCACCTTACCAGGTTGAGAACTGCAAAGGCAAAGAGGGAAGCGCTTTAAGTCATGTACGCAAAATAGTTGAGAAACATTTTAGAGACGTGGAAAGTCAGAAGTCCATGCAACGTTCACAAGCACAGCAAACACAGAAGGACTCCACTTTATCTTCTTGAGTTGGCAGTGTGGGTCAGCCGGGGAAGTTGTCGCGGGTGGTTTTGTTCCCACTGCCAGACGAAGTCGGCATTCCTTGTCCTCAGTCTGAGACCACAAGGAGCAGCGCTGAGGGCCCTGGATCCAGAAGATCAAAATACCATtaaatgaaaaagacaaaaaagagagaggaaagattAAATCTTAAATTAGACTTTATAAAGAATAATTTAAACATGAACCATAAAGCAACCATAGTTTCCTTAACTAACTTGTCTcattctgccccccccccctccccccatccctgaatacttttctttttctgcccTCCTTCCTTTGCCTTCATTTCCATTTCAAAAAGAGAAAACTAGAGCAGTCAGAAAGGCTTGTTAGCTTTATTTTCTGTCATTGTTTCCTTTTTTGCTGTATCCATGTTCTACtgtctgtattttctgtattttaaacaaaatgtgACTTAAAATGCCACACTTTAAAGGACATtttctaaaataaaagtaaCGAAAATTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285696 lncRNA upstream 1653 8456750 ~ 8458203 (+) True G210837
TU285646 lncRNA upstream 258370 8201281 ~ 8201486 (+) True G210799
TU285633 lncRNA upstream 280703 8171115 ~ 8179153 (+) True G210790
TU285631 lncRNA upstream 300817 8158836 ~ 8159039 (+) True G210789
TU285601 lncRNA upstream 391819 8067717 ~ 8068037 (+) True G210766
TU285714 lncRNA downstream 28004 8496613 ~ 8497654 (+) True gngt2b
TU285725 lncRNA downstream 64379 8532988 ~ 8567487 (+) True G210862
TU285729 lncRNA downstream 112396 8581005 ~ 8625108 (+) True G210866
TU285825 lncRNA downstream 205397 8674006 ~ 8674260 (+) True G210938
TU285867 lncRNA downstream 500474 8969083 ~ 8971699 (+) True G210964
XM_039788527.1 mRNA upstream 7438 8386130 ~ 8452418 (+) False tanc2b
XM_039789031.1 mRNA downstream 997 8469606 ~ 8473392 (+) True LOC120551547
XM_039789254.1 mRNA downstream 28053 8496662 ~ 8497628 (+) False gngt2b
XM_039789089.1 mRNA downstream 31121 8499730 ~ 8506507 (+) True si:ch1073-13h15.3
XM_039788410.1 mRNA downstream 74926 8543535 ~ 8564587 (+) True col1a1b
XM_039788206.1 mRNA downstream 108053 8576662 ~ 8596015 (+) True LOC120551063
XR_005637922.1 other upstream 260177 8199565 ~ 8199679 (+) True LOC120551817
TU285573 other upstream 397587 8057743 ~ 8062269 (+) True dydc2
TU284934 other upstream 1987701 6470656 ~ 6472155 (+) True G210266
XR_005637869.1 other upstream 2367118 6083435 ~ 6092738 (+) False kctd2
XR_005637777.1 other upstream 2771960 5591336 ~ 5687896 (+) False LOC120550763
unassigned_transcript_1162 other downstream 132569 8601178 ~ 8601248 (+) True trnag-ccc_1
XR_005637919.1 other downstream 574037 9042646 ~ 9046468 (+) False LOC120551795
TU285955 other downstream 1104506 9573115 ~ 9576418 (+) True rpl38
XR_005637867.1 other downstream 1415762 9884371 ~ 9898509 (+) False qki2
XR_005637868.1 other downstream 1415762 9884371 ~ 9898509 (+) False qki2

Expression Profile