RNA id: XM_039789069.1



Basic Information


Item Value
RNA id XM_039789069.1
length 3576
RNA type mRNA
GC content 0.40
exon number 4
gene id LOC120551583
representative True

Chromosome Information


Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 3587079 ~ 3621179 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ATGGGAGAATACTGCGGCAGAGTTGGAGAAATTGCCTCAGATAAGACTGTTGCTGCCCTGGGTCGACCTTTCACCCTGGGAATGCTCTATGATGCTCGGAGAGATCAACTGATCCCAGGTTTGACATTGTGGGATGATAAAACTCTACAAGGCAAGATAAGTGAAAGCTCTCAGCGAACCAGTAAGTCTCATATTTCGACATCTGACTCCACTGAATCCAAGTGCAAGCTGCTGGATGTTGAAGTTTCTCTGAAGGCCAGTGTCCTGGGTGGACTGATTGAATTTGGAGGATCTGCCAAGTATCTGAATGATCAGAAGAAATTCTACAATCAGAGCAGGGTGACGTGTCAGTACAAAACTACCACCAACTTCAAGCAGTTAATGATTGAACAACTAACCATGGACCCCCAACATATGGATGTCATTAAGAAGAGCTCAGCAACACATGTAGTCACAGGCATCCTTTATGGGGCaaatgctttctttgtgtttgacaGTGAGAAGGTCGAGTCCAGCAGCGTTCAGGACATCCAGGTCAGCATGGAAGCTGCGGTAAATTTGTTACTCGTTAAAGCTGAGGCGAAAACTAAGGTACAGCTGACTGAAGAACAAAAAACCCTGACTAAGAATTTATCCTGCACATTCTATGGAGACTATATTCTTGATAGAAACCCTGCAACATTTGAAGATGCAGTGAAGGCCTACGAACAACTCCCACATCTACtgggagaaaaaggagagaaggcTGTTCCAGTGAAGATCTGGCTGATgccgctgaagaatttccactCCGAAGGTGCTGAGCTGATGAGAGAGATCAAGGACCGTCTAGTGAGTAAGGCAGAGTATGTTCTAGACGATTtaaaggaaaaagaaataaGATGCAACGATTCTCTGGAAGAGAAAGTGGTGGGGCAGTTTCCTTTGATTCGAGAAGAGTTGAGCACTTTCCAAAAATTGTGTGGTAGTTATGCATCTAAACTCCAGCAGGCCTTGGCAAAGACTCTTCCCTCCATCCGTGAAGGAAAAGAAGATGAGAGCTCACTAGACCAACTCTTTGAAGACAGAGAGAAGTCACCATTCAGTCAGGAAAAACTAACCAAGTGGCTGGAtcgtaaagagagagaaatcaacATCATCAGATCCTGTGTAGATACCATGGAGGGAATAAAGATCGTCCCAAATCAGGCAGAGCTGGACAGACAGGTTCTTGCTGCAGGTGTAGAAGATGCTCTGTGCTTTGTTTTCACTTCAGTGGAAAGGGGTGATACAGACCTTGATGTGATGGCTGAATACTTGGACTTCCCAAAATTAGGAAGCACCAATGAAGATCCATGGTACTACTCAGCTGAGGTTTTCAccaaaatgagagaaaaagcCAAAGCTTTCCATCACTTTGCCAAAGCACAGAAGAACAACAGTCGATTCCGTTTCGTCATAGCAGCCATCGCTAACAAGAAACACACAGGAGCAACCATCTACCATTACAAGAACGGCAATCTGGTCACTGAAGATTTTTCAAAGCCTGTCCTCCCTCCTGTGGAGAACATCACAGACAGAAGACAACTGATCTGGTATGCCTGTGATCTCAAcctggacccaaacactgcaAACTACAACGTCATTCTGTCTGAGGGAAACAAGAAGGCAACACATGGAGCACGGCAGTCATATCCTGATCACCCAGAGaggtttacacaaacacaccaggTGTTGTGCAAAGAGAGCTTATCTGGGCAACATTACTGGGAGGTAGAGTGGAGACTGAATTCTGACAATCATTGTTGTGTTAATATTGCTGTCGCATACAGGGAAATTGAAAGAAAATCAAACAATTTAGAGAGCCAGTTTGGACGTAATGCCTTATCATGGGCTTTTGAAAATAACAAATCCAACAGTCACACACTTTTTGCATTGAAAAATAATGAGAACGTGTGGAGAAAGCCTTATCCCTCTGATGGCTGTAACAGAGTTGGGGTGTATCTGGACTGGCCTGCTGgcactctgtccttctacagagtCTCCTCTAACACACTGAGGCACCTCTACACCATTCGCACCACATTCACTGAGCCTGTTTACCCAGGATTCTTGGTCTATTGTCAACAAAACAATGCGTATCTGTGTCCATTTGAATAGGAGTAATGACAAATACTTCTCAGATTCTTGTTCTGTCAGTAGGAATATGGGTTtacatttaaagtttaaagaaCAACTGAACATCACATTTTATCTCGACCATGCTTCACAAATTTAAACATTATATTCAAACCCAGAGACACCAGCAAAATTGATCATGTAATCAtcaagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttatcagtTCATGTTGATTTGATGCACAGCCTTTATTTAAAACTGGCTTGTACTTTACAAATGTATTATCAGTTTAAACTTTCATTGCTTACTACTTGACATTTAAGATACAGGGCTTATATCAAGACTCAATTGCTTTGTAAACACTTGTATGTTGAAATATAACTCACAGCTCATGTAATAGAAGTGGttttatttagcattttgtttgttttcttctttgtgAAGTACTGTCTTTAAATCGTTTCCAGACTACAAGTTTTTCTGTTAAAGACACGTCTGTACTTCAACCTCCACTTTGGGTTCAATCATTGACTACTGTATTGAGGAGAGAGTTGATGTTAGATGTTGGATACTTTGCTGATGTTTATAGAGTTGAAGAAATGTATTTTCCTGTTAATCAGTTAATGTTGATGTGAAGCACAGCCTTCTTCTCAAACTGGTTAGTACTTTGATTGCTTGGTAATTCAcagataattatttttatttgaacttTTTATTCTACTTCCTGATACTTAAAGATAAAGAGTTTGTATTGATACacaattgctttttttaacactaGTCTGTTGAAATATAACTCATTACTCATAGCtgatgtaaaagaaaaatgactAACTTGTTTAGTTGAAATTATCATGTTAGTGATGGGATATAAATTACCTAAAGTGCATATTGTTTAATTTAgcattttgttcattttcttCTTAGcgatgtatttttttaatatttgtcttTTCAGAATATAAGAGGAATCATTTAGTTTTTCTGAGTCTGTACCTTAGCCTTAACTTTGGGttgaagaaatgtatttttctgtaaATCAGTTGATATTGATTCAATGCACAGCTTTCTTCTTAAACTAGTCTGTGCTCcacaagggttagggttagcagtTTAAACTTCCATTGGTACATGCCAGATAATTCTTTTTATTGTAACTTTGGATTGTACTTGCTGATAAAGAAACAGCTAATATTGATTCACAATTGCTTTTTCAACacaatgcaaaaaaagtcatgtaaAAGAAACGGGGGAGTCACTGTTAACACCATTTAGTTGCAAACCCTGCTGCTGTTTACAGAGCTGAAGACATGTCAGGTTCCTGTGACACTGTAACACCTGTTGGATATGTTTCCTCTCTTCTTGAGCAGAATATTCAATAAAGTGGAGACCTGACTTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU283954 lncRNA upstream 63313 3469012 ~ 3523766 (+) True G209508
TU283947 lncRNA upstream 238979 3347898 ~ 3348100 (+) True G209501
TU283771 lncRNA upstream 385945 3110699 ~ 3201134 (+) True G209382
TU283770 lncRNA upstream 385945 3199999 ~ 3201134 (+) False G209382
TU283772 lncRNA upstream 385945 3200499 ~ 3201134 (+) False G209382
XR_005637751.1 lncRNA downstream 166794 3787973 ~ 3790675 (+) True LOC120550570
XR_005637748.1 lncRNA downstream 168267 3789446 ~ 3790675 (+) False LOC120550570
XR_005637749.1 lncRNA downstream 168267 3789446 ~ 3790397 (+) False LOC120550570
XR_005637753.1 lncRNA downstream 197922 3819101 ~ 3820620 (+) False LOC120550571
XR_005637752.1 lncRNA downstream 197922 3819101 ~ 3820616 (+) False LOC120550571
XM_039788750.1 mRNA upstream 1053616 2526662 ~ 2533463 (+) True LOC120551356
XM_039789064.1 mRNA upstream 1224720 2344346 ~ 2362359 (+) True LOC120551576
XM_039788394.1 mRNA upstream 1274630 2302291 ~ 2312449 (+) True LOC120551177
XM_039789062.1 mRNA upstream 1288275 2277900 ~ 2298804 (+) True LOC120551574
XM_039789061.1 mRNA upstream 1580534 1992977 ~ 2006545 (+) True LOC120551573
XM_039789071.1 mRNA downstream 49411 3670590 ~ 3687777 (+) True LOC120551587
XM_039787170.1 mRNA downstream 208136 3829315 ~ 3832201 (+) True LOC120550572
XM_039789000.1 mRNA downstream 321202 3942381 ~ 3943422 (+) True atoh1c
XM_039788724.1 mRNA downstream 377194 3998373 ~ 4028282 (+) False LOC120551345
XM_039788723.1 mRNA downstream 377194 3998373 ~ 4028281 (+) True LOC120551345
TU283708 other upstream 753405 2779741 ~ 2833674 (+) False G209344
TU283706 other upstream 789944 2715645 ~ 2797135 (+) True G209344
TU283630 other upstream 1226777 2344281 ~ 2360302 (+) False LOC120551576
TU283626 other upstream 1252794 2332178 ~ 2334285 (+) True G209284
XR_005637782.1 other upstream 1973341 1594481 ~ 1613738 (+) False LOC120550774
TU283964 other downstream 24830 3646009 ~ 3646997 (+) True G209514
TU283994 other downstream 197674 3818853 ~ 3823251 (+) True LOC120550571
TU283997 other downstream 200720 3821899 ~ 3823251 (+) False LOC120550571
XR_005637866.1 other downstream 377194 3998373 ~ 4027498 (+) False LOC120551345
XR_005637777.1 other downstream 1970157 5591336 ~ 5687896 (+) False LOC120550763

Expression Profile