RNA id: XM_039789244.1


Basic Information

Item Value
RNA id XM_039789244.1
length 4401
RNA type mRNA
GC content 0.42
exon number 10
gene id opn4b
representative False

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 10658853 ~ 10682631 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACCCCTCCACAGCTGCTGTACCATTAGCTCTGTCAGAGTGGGATTTGAGAGCAGGGCAGCGATGATGACTGGCCACTTGGACTCCTAGACCTCCTCACATATACTACTGTACACCTCTCAGGTCCACTTCTATCACACACAACCGCTTTAGGTTAACCACCGTGGACCGGGAATGGATTCTAGGCTCCTGATTGGACCGGGGGTCCCCACGCCGGACCCGACCGCCCGGGCACCCTGGAACATCAGCTCCATCAGTCCGCACCGGCTCATGGAGCTGGCTCCTGTTGCAACAGCTGGTTCTGTGGTTCCAAGCCACGTATTTCCAACGGTAGATGTCCCAGACTACGCTCACTACACCATCGGTATTGTCATCCTGATCGTGGGCATCACAGGCATGCTGGGAAACTTCCTGGTCATATATGCTTTCTGCAGGAGCAGGAGCTTACGGACACCATCCAACATTTTCATCATTAACCTGGCAGTCACAGACTTTCTCATGTGTATTACTCAGACACCCACCTTCTTCATCAACAGCATGCACAAGCGATGGATTTTTGGAAAGAAAGcttgTGAGATGTATGCCTTCTGCGGAGCGCTGTTTGGTATGTGCAGTATGATGACACTGATGGTGATCGCGGTGGACCGTTACATGGTGATCACCAGGCCTCTGGCCTCTCTGGGGATGATGTCTCGCAGGAAAGCTCTGATCATCCTGGCTGTTGCCTGGATCTACACAATGGGCTGGAGCCTGCCCCCATTCTTTGGCTGGAGTGCTTATGTCCCAGAGGGTCTGATGACGTCTTGTTCCTGGGACTACATGACGTTTACCCCGTCTGTCCGCTGCTACACCATGCTGCTCTTTACCTTCGTCTTTTTCATCCctctcttcatcatcatctACAGCTATTACTGCATCTTCAGAGCCATCAGGCACACAACCCGAGCGTTAACTAAGATCAGCTGTGCGGGCAACAGGGACTCTGCAAAGAAGTTCAATAAGATGAAGAGTGAATGGAAGATGGCCAAGATCGCACTCATCGTCATCCTACTATATGTCATCTCCTGGGCCCCTTACTCCTGTGTGGCACTCACTGCATTCGctgggTACGCTGACATGTTGACTCCGTATATGAACTCTGTTCCTGCTGTGATTGCCAAAGCCTCTGCGATCTACAACCCCATCATATATGCCATATCACATCCCAAATACAGGTCAGCGCTCGGTGCGTATATTCCCTACCTCGGGGCATTGCTGTGTATTACTGGCAGAGACCGTTTAAGCAGCAGCAGTTTCCAGTCTACCCGGCGATCAACccttaccagccaatcagagtgcAAACGCCCCAGCAAGCCCCACAGGGCCTCCCTGTCTGAGAGCGAATCAGCCCGCTTCTCAGACACGGAAGAGGACTGCTCGTCTCGGACGTCTGTCATTCGTCAGTTGTCCAGTGATGTCAAACAGGTGCGCCCTGCCAGCAAGAGGACAAAGGTGAGAGGTCCCAACACTGGAGAGTCTGAGAGGACTGCCACCCACAACCCCACTGACCCGACAATGTGTCACCTCTCACAGATCACAGTGGACAGAGTGATGGAGGAGTCTGAGTCAAGGACTTTGTGTAAGACTATGTCATCCGTCATTGTAACCTCCATATCCAGCCCGTCTATACTGCCTAGTCCCTCTGGTTTCCAAGGTAACCTCTAATTGATCAAAACGTACAGCCCGGTTGCCAAGGAGCCCCTTGACATAGCCTAACTGGAGACATCTTTACCATAAGCAACTGGACAGAAGTGCAACAGTGtgtaaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacctgttTGCTAGTTATAACTCAAAACCAGAGCATGCTCTCTGTTATTCTTTTGCATACTGAGTGTGTGAGCGTGAATACCCAGTACATTTAAATACATGTGTACATATTTGCacccatatatgtgttttaCTATTTCCGACATATCATAATGGGTGGAGATGGTTTACCTCGGAGCCGCAGGCAACAAATTAGCCTTAAAAACACAATGTGAAAAGTTCAGTCTCAAGGGTTGGGTATTGATTCGATTTTTAGTGATTGTTGATTCAGATTCTTGTCATCATATTTGCGTAGAAGAAACCATAATACATTTTGTCATACCGTACATTGCATTGCATTTTCTGATTCTTTTTGGTCTTGGTTTGCATTGATGTTGATTAAATATGTGTTTAAACATTACCATTAACAAACCATTAGCTGATTCTGAGGCAATATGACTACAGCTAAGGGTCATCAAACAGGATAAATTAGTTTATCAGCCATATTTTAAACACTACATGCATCAATGCATACTTATCTAGCAAAATAAACCTAAGCGCAGTAGGTTTGTCTAttctatataaaagcatgtttttttcttaataTAAAATCAGTTTCAACTCAGAACCAATTCTCGATACCCAACTCTATAGTCTTTCTATTGTTTGTGCGGTTTTTCTCAACTATACTTGAGCATTTGAGAATATACTATGGATACTGATGCATTAATCAGTATTTCCtatattaaaattaaatcaAATGACTCCTGGAACTGGTGGTAGTACTAATCCCACTGAGAATAAACACTCTGCAGATTTAAGCCACTTTAAACTTGTTCGTtctcaaagaaaactaaaaccaTGCTGCTTATTAACTGTGAGCAGCACAAGAGTTAGCACAAGCAAACTGCTCCTACACAACGTGAGAGACAAAGTAAACAAGTAACTGGTAAAGTACACCGTTTTCTAGCACCTTTGTTTCCCATATAgtgaatgtgaaaatatatttattttttgtgtatatttgtatttataattTCAAAAATAACCTGCCTGAAAATCTGCTGAAAGTTCAGATTGACTTTATTGTCATCTCAGGTGGTGCAttaatttaaaaatgcaaaaacttAGTAAGAATGTGACCTAGTGGCTTAAATAGTACAAAAGAGCTTTTGATCCTATCCAACACTAAATGGCTGTGTttatgtgcatacattttcaggCTCATACTAGTTTCTCccagaacatgtttacatgctttaatttaaaaaaaaaatgttctcatatactgtctgtctgaatataacGTCTGTCTGAGACGCTTCGTTTTAGCATCCGTCTCTTTAAACCCCCCTCCCGAAAGCaaagtctgctctgattggcttgcgagaaaaatatgtaaatattataGGGGCAGTATATTCTAATAAACCTGCATGTGAAATGCCACATCTTTGGCTTGTTGAATGTTTTCTCATCTAGGCAGCCACCAGGAAACTGCCTGGGTTGTCTTATTTCAGTTTGTGGGTTGGTAGGCCCTCCAGATACCCAAATGTTTGTGCACAAGCACTGAGTTTTCACGATATGTCCCTTTTAAAAAATGACCTTCCTTATGcaatgctgctgcttcacagctGACTTTAAAATGATAGAGCATCACACTAGCACATAAAACCACCgttttaaaatcaaatcaacCTGTGGAAAACACTGCTAATACTGTATGTTAGCCAGGATAAATTGACTGCTAATTTCAGTCTCAGTCTCTCATCACTTAATCACacttaatgcagctttaatatgAGGTGTTTTACTTCTAAACTGGGTGataagacacatatacacacatgcaaccGGACATGAGAGGATACAGTCAGATCATTTACCCTCTGGTTCTTTGTCATTGGTTTTTCCACTCCTGATGTCATCATGTACCCCACTGTAGATCAGTTCACAAATGTATTACAGCACCATAGTACATCCCAATACCCAATACTGTGTACCTatttgagtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccgcacTGAAGAACTGGACTCACTACTGTACTTTTGGTTCCAAACCTTGCTGTAATGTCTACTTTTAGATATAATGATGACAGTTTACTGCATTACTTTACTGTTATTAGAGTGTGGTTTCAGGATTGTTATTATATATCTCATCAAAGACAGTATGTACAGAACACTAACTATGTTTTGacatccttttttttatttcaaagctCTTTTTCTCCACTTCTGTACATTGCAGTTCCCTTTGGCATTCCTAAGATTGCTGCATTATTGACTATATTtgtagtaattttttttttttttaaatgataaacAAATTTAAATGTTACTTGAAGGTTGATACATTCCCACCACTGCTCATTTGTTCTGCACTACCCATCAATGAATGTACAAAATTACGTTTTTTTGACCAAATAAGTTCTGCTTTAATGAATTGATGGTTTCATGAGGTGATGGTTTCATGTTGATCTTTCTTgtacaaaatgttttgtgttgttatttattttctaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286374 lncRNA upstream 46954 10597227 ~ 10611899 (+) True G211321
TU286377 lncRNA upstream 71001 10572625 ~ 10587852 (+) True G211323
TU286372 lncRNA upstream 72756 10564246 ~ 10586097 (+) False usp54b
TU286356 lncRNA upstream 150529 10506326 ~ 10508324 (+) False G211306
TU286390 lncRNA downstream 412 10683043 ~ 10683247 (+) True G211327
TU286439 lncRNA downstream 132113 10814744 ~ 10815203 (+) True G211356
TU286421 lncRNA downstream 134638 10817269 ~ 10818275 (+) True G211349
TU286429 lncRNA downstream 136427 10819058 ~ 10912098 (+) False kcng3
TU286430 lncRNA downstream 136427 10819058 ~ 10896709 (+) True kcng3
XM_039787929.1 mRNA upstream 37441 10564221 ~ 10621412 (+) False usp54b
XM_039787803.1 mRNA downstream 4662 10687293 ~ 10700764 (+) True ldb3b
XM_039787804.1 mRNA downstream 4662 10687293 ~ 10700764 (+) False ldb3b
XM_039787806.1 mRNA downstream 4662 10687293 ~ 10700764 (+) False ldb3b
XM_039787805.1 mRNA downstream 4662 10687293 ~ 10700764 (+) False ldb3b
XM_039787807.1 mRNA downstream 4662 10687293 ~ 10700764 (+) False ldb3b
XR_005637805.1 other upstream 37441 10564252 ~ 10621412 (+) True usp54b
TU286340 other upstream 198354 10456239 ~ 10460499 (+) True G211301
unassigned_transcript_1164 other upstream 294940 10363832 ~ 10363913 (+) True trnal-aag_10
XR_005637921.1 other upstream 441632 10217108 ~ 10217221 (+) True LOC120551816
XR_005637923.1 other upstream 442374 10216365 ~ 10216479 (+) True LOC120551818
TU286397 other downstream 20335 10702966 ~ 10715226 (+) True sncgb
TU286398 other downstream 20335 10702966 ~ 10715226 (+) False sncgb
TU286399 other downstream 20335 10702966 ~ 10715354 (+) False sncgb
TU286403 other downstream 40902 10723533 ~ 10725559 (+) True G211336
TU286436 other downstream 118709 10801340 ~ 10803972 (+) True G211354

Expression Profile