RNA id: XM_039789280.1


Basic Information

Item Value
RNA id XM_039789280.1
length 515
RNA type mRNA
GC content 0.58
exon number 4
gene id LOC120551740
representative False

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 4408832 ~ 4411773 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGATGGGGACCTGAAATATCCATGACCTACCCAATCCAGCTGTGACTAATCACTCAGCCCAGGACACGCGTGGAGAACATGGAGGACGACTTCCGGCCGCAGGTGAAAAAGGTGGCTGTGGCGATGGGCGCGTCCCTCACAGAACAGGAGGTAGACCGTATGCCACGGGACATGAGAATGCAAGGGAACTTCAACTACAGCAGGTTTCTGGAGTACATGAGGCAGTTCGAGACCTCGGAGCAAAGAGAGGAGGCCATCAAGAAGGCCTTCATGATGCTCGACAAAGACGGCAGCGGCTACATAGAGTGGAACGAGATCAAGTACATTCTGTCGACAGTACCGGCTGCGAGCCCGTTGGCTCCCCTCTCCGATGAGGAGGCGGAGGCCGTGATCCAGGCTGGCGACGCTGATGGAGACGGACGCATCGACTACAGAGGTGGGGGCGCCCTCTGGTGCCCTGGCCTGCTGTCACCACTGAGGCTCAGCAGTTAGTCAGTACAGCAGGCTTCACACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284178 lncRNA upstream 216664 4191914 ~ 4192168 (+) True G209686
TU284177 lncRNA upstream 220350 4188093 ~ 4188482 (+) True G209685
TU284176 lncRNA upstream 222112 4183573 ~ 4186720 (+) True G209684
TU284175 lncRNA upstream 222112 4185597 ~ 4186720 (+) False G209684
XR_005637865.1 lncRNA upstream 320994 4085324 ~ 4087838 (+) True LOC120551338
TU284215 lncRNA downstream 11468 4422061 ~ 4423044 (+) True G209706
TU284226 lncRNA downstream 42571 4453164 ~ 4453398 (+) True G209714
TU284227 lncRNA downstream 43745 4454338 ~ 4455300 (+) True G209715
TU284228 lncRNA downstream 48629 4459222 ~ 4459427 (+) True G209716
TU284229 lncRNA downstream 51776 4462369 ~ 4462612 (+) True G209717
XM_039788596.1 mRNA upstream 101385 4195773 ~ 4307447 (+) False baiap2b
XM_039788598.1 mRNA upstream 101385 4195773 ~ 4307447 (+) False baiap2b
XM_039788600.1 mRNA upstream 103177 4195774 ~ 4305655 (+) False baiap2b
XM_039788601.1 mRNA upstream 103768 4195774 ~ 4305064 (+) False baiap2b
XM_039788599.1 mRNA upstream 117971 4195774 ~ 4290861 (+) True baiap2b
XM_039788406.1 mRNA downstream 245724 4656317 ~ 4669139 (+) False LOC120551185
XM_039788405.1 mRNA downstream 251892 4662485 ~ 4670517 (+) True LOC120551185
XM_039788404.1 mRNA downstream 251893 4662486 ~ 4669139 (+) False LOC120551185
XM_039788409.1 mRNA downstream 263644 4674237 ~ 4709578 (+) False map2k6
XM_039788772.1 mRNA downstream 478493 4889086 ~ 4891504 (+) True LOC120551365
XR_005637866.1 other upstream 381334 3998373 ~ 4027498 (+) False LOC120551345
TU283994 other upstream 585581 3818853 ~ 3823251 (+) True LOC120550571
TU283997 other upstream 585581 3821899 ~ 3823251 (+) False LOC120550571
TU283964 other upstream 761835 3646009 ~ 3646997 (+) True G209514
TU283708 other upstream 1575158 2779741 ~ 2833674 (+) False G209344
XR_005637777.1 other downstream 1180743 5591336 ~ 5687896 (+) False LOC120550763
XR_005637869.1 other downstream 1672842 6083435 ~ 6092738 (+) False kctd2
TU284934 other downstream 2060063 6470656 ~ 6472155 (+) True G210266
TU285573 other downstream 3647150 8057743 ~ 8062269 (+) True dydc2
XR_005637922.1 other downstream 3788972 8199565 ~ 8199679 (+) True LOC120551817

Expression Profile