RNA id: XM_039789395.1


Basic Information

Item Value
RNA id XM_039789395.1
length 4976
RNA type mRNA
GC content 0.46
exon number 11
gene id c21h10orf90
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 11476964 ~ 11494645 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGCTATGTGCCTGACTGGAGACAGTACTCACTAGCACCTAGTTTATATGAAGACAGAGAGTGTTTACTTCCTAAACACTGTGGACGTAGGAGTTGGAAGCAAGGGAAAAAGGGTGGTTTGATCCGTAACAACGATGACCTCCGGCATTCTTGTAGCTACTAATTCCTTGCAGTGCATTTCTGGCATGCCTCATGATAAGAAGTCCAGTTGAGCCAGGGGGGTCTCATTAATACCTCCACTGTAAAGGGCTTTTATTGTGGGCTGAAACTTGAGAGCTGTGAGTGGTTACCTGAGCTCCAAAGGGATGACTCTCCGCAGGCCAGCTGACCACCTACGAAGAGCTCAGAGCTGGAGGAGATCAGGAGATGAGTCCTACTGGGAAAGCTTAATAACAGAGGGGGAGGTTTTGCACCGTGTTTCTCGCCCTCCACGTGCACCTCGGCCCCAGAGTGCCATTGAAGGACACCAGCTGGATGGCTGGCTGGAGCACCTGCAGAGGATAGAGAGCGAACTTCTCAGAGCCCCAGTTCATGATCAGGTTCCAGCTTTCAGTGACTGGACAACATCCATGCCTACGCTTGACAAAGAGGCAACCGGACGTGCTAAGAGACAGCCGGGGATCCCCTCCTTTAGCAGGGGTTCATCTTCATGTGGAAGTCCCAGCCTGTGTGAGAGTTCTCTGGGCAGCCAGGAGTCCCTCCAAACTGGgtttctttctcctccagaGCACAGAGAAAGCTGGGAGAGAGCGCATATGATGCAGGCCCCAAGGAAGGAGCAGGCTCAACTCAGTAGTCTTGCTCCAGTCAAAATTGGGTGGCTGCCAATCCAAAGAAGAGTGATGATGGTGGGTGATGCTTGCAACCAAAGCCAGTTTTTGGACCACTCTACTTGCCAGGTGAAATTGAAACAAACCATCACTCCAACATTTCAGAAGAATCTAGCAACAGCAAACAGGCCCCAGGATGAGGAAGAGGCGGAGAGAAGTCAAAGTGCTTTAGGTGAGAAGACGTGGCAGACACCCGATCACGGCTCTCCCAATATTAAACAGGTGCCAGAAAAACGAAGCTTTCCTGCGAACGAAGGCTACAGACCTGTAGGCTGGCAAGCTCTGAGGAGAGGCTGGAATACCAACAGGGTGTCAGCTTTCCCTGGAGGCAGTCAGTCCAATGAGCTCCCCACAGGCACAAGCTCAGACCCCAACAGGAAGtcctctctgatgaaaacaaccAGCATAGACCCCCTCAAGCATGCTCCTCTGCATCAAACAACTGTTGCCGATCCCTTCAAACCCTCACACACTGTGCTGCAAAGGACAAACAGCACAGATACAAACAAGACACATACGCCTTTGCATAGAACAGGCAGTGTTCAGCCTATAAGGGCAACAGCCCCGCTGTATAGAACGAACAGTATCTCACAGCcttcacacatacagacaaactcTGCTGTGACTACACTCATCCCTCAGAACAAAGCCGGCttctcctccatcaccatctcaTCCAGGAAATTGAGCAGATCATGCAGTTTGCCTGGCCCCGACACCTGCAACCACTCTTTCCGATCCAGTGCATCCGCTTCTTCGCCACTATCCCACCAGTCCATGGACCCAAACGCCAGGCAGGTCACAGTGCAGAGGAAGGCCACTATAGTCAAAGTGACAGAGGAAAGGATGATGTCCAGCCCGAGCACAAAAAGGGCGGGGACCCCAACAACTAGCCATACTTTGGACACAGTGGTCCACAGAAGAAAGGCTACCATCATCAAAGTGACAACGCATAAGGAGAGCTACAGTCCAGCCAAGGCAGGGTCTGGGACGAGGCACCCAGAATACAGACACAGCTACACAGAAGGAGTGTACAAGGAAAACAGCATGTGGAGTCCCGGAAAGCATTCACAACACAATGCAGCACCTTCATATCACCATCTGGATTTCAAAAAGGGGCCAAACTCAGCCGAAGCACCAAATGCATCCACTTCAGATCCAGAGAAAAATGGCAGAACACTACACAGATCCACGCTGAGTCTTTTTGTGAGCAACCTCCCTGCTATAGCAGCACCAGCTCCCTCAGAGGTTTCTCCAAAGGCTGTTGGACAGAGATCGGACAGGCCGCACAGACCACTCAGCTGTTATGGCAATATGTTTGGACACACTGAGCAAAGCAAGGAGAATGTGACACAACCAGCCACCAGTAAATGGAGCTTTGAGCAACCACAAGAGACCAATATCAACCCTGTGAACTCCGACAGTAGTTTCATCAGCCGCCGAacagcagcaaaagaaacagaTCAGCTAGTGGCAGACACCCTGAAGCCAAACGGAGGCCAGAAAGAAAGATTGCCGCCAGAGATTGCAGTGAGGAGAGCGTCCCCCTGTCTAACTCTCATCAAGGCTCCGGATCCCCATTCACATCAGTCTCAAGAGGAAGTGCTTGCCCTCAATGCAGCTGCCATCATAGCAAATATCAAACTCCAAAGACAACTTAGTAAGAAGAAGACACCAAATGGCAATTGTGAGAAGGACTCCGCTGCATCACCCCAGGGAAATGCTGCTGTGACAGAGGACGGGAAATGTATGAAGCCACATCCAGATCAAAGAACAGTCCAGCGCCACAACCAGCCTCATGCTTCATTTGTTCCACTGAGCCCTGACCCTCAAACTCTTTCTCTACAGGACGCACTGCAGCAGTCCAGACCAGACTTCATCAGTCGTTCCAAGAGCAGACTGCAAGAGCTGGAGCGAAGAGCACAGGAGAGGAGGGATCTGGCGGATTCGGTAGACCCACGGTCCGTTGCTGCTCTCAGGCAGGGGAGAGCCCACAGTGCCCAGTGTACCTCTCTGAATGatAACCTTTTCAAACCCAGGGATAGAGCCATTACTGGGAAAGAAATGCAGCTGAGATCTAAGCGTTCGCATGCTgaggtgaaaaagaaaaaacaggaagagaagaagagggaggCGTGTTTGAGCAACAGACAGCGAGTTgaactttttaaaaagAAACTGTTGGCTCAGCTTCTTCAAAGGAGCAACAGCTGAAAAGAATGACAACAGATGACGATGATGACATGAAAAAGCCTGTAGCATTGCATAACAGACTGATGGTGTGAACTTTGACCTTTGACAGTGCTGAATATGAGTTAAACTATCAGTGTAGGTCAAGATATACCTCTAGCTGTCCTTTAGCTAGCCTTTAGTTTGTTTCCCTCATGTGTAACCATTACTTATTATTCAAGTTACAGAGCTTAACATCTGTTTTTCTGTAAGATAAAGCCATGGCAAGCTTTCAGAAGCCCAGAAGGTCATTTAACATCGCTTACTGTAGCACTGTTTTGAAGGTTTTCCAGAACCTTCAAAGACTCTTTTGCCCATCTGGATAAATAGATATTTCTGATGCACAATAAAAGAAGACCTTTAATCAGTTTTCCTTATTGCGACTCTACTTTATTAACTAAACATTAAATGAATGAGAAGTTTATATTAATGTGTTGTACAACTCCATTCATGGAGATATGTCCATCTTTGCTTGGATAAGAGACACAAATTAGCAGTTTAGGACAGGTTAAATTGTCTTGGGCAGATGACAGAAAATACTTGATGCACTCGGACAGAGTGAATTGAAATACCGTCGAAGCAGCGCTAAGTATTGTTAAATGGCCTTCTGGGTTTTTGAAAGACTGCCATAAATTATGTCTTATGTCTTTTGAGAAAAAACACATGCTGATCTCTGTGCCTCAGCTGTCCTAGCTGCCCTTGTGATATGCAAGATGGCCaaaatgaatgtatgaaatcGTGTCTCAACATTCTTTTTTGGTTGTATCACGTTGTATCACATTGAGCATCATATAGACTCACTGACTGACTTTTGATGTAAGATATAAGCCAGCAATGTTTGCAGTTTATCCGTGTTATCTTGTTTTCAGTTGACTGCAAATTGCCTTTCTTTCCGGAATACTTTGTGTGATGGGATGCAGAGTAAGCTCTCACTGCATGATAAAGCACTGATGCTGATGTCCTCACACAGCCACTTTCACATGATCTCATGTGACGTGAAGCAGTGATACAAAACAAAATCATTTAGAATGCTTCACAGTCCCTTCCAGGACAGTCTTCAACCGCCATCCTCATTATATAACCAATAATCAGAGTGAAGCATGAGGTGGGCTCTGCCATTATTCGGTGCCAGCTACTAGCTGTTAAGATGGAGCAATGTGACCTCTTCTCACTGGAAATGCCCTGTTAATGGACAGTGCCGATTTGAATGGATCTTTTGTCTCATGACGGACTGGAGCCCgccattgcagatttagatttGTGGGATTTAAAGAGAGTGCTGCTCACCAACATGATGGAGCTGGGAATAAATCAAAAGTGAGATGTGTGAATCTTTATTTGTGAGACAACAGAGCAGACACTTCATTATTCCTAATTGTTATTTTACTCATTAGCCTTTAAAGTCAGAGTTCTTTCATAGTTCAGCTGTTTCATCTATCTAATTTTGCAATGATGTCTTTGGTTTTTGTAAACCTTATATTAATGTCATATAAGTGCCCATACATGTGTGGGTGTCTTTAGACTATAGGAGATCATCAATAACAGCACTCGTGgttctgtttgtttctttttttttaaattagtaaTTTTAGACTTGAAAGTAGAACACAACTATGAACCATGACTGCTGGTTGAAGGTtatttactctgtgtgtgtgtgtatgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttctctattcAACTTTACATAGAAGGTTTCACTATgcaatgtatttctttaaatttcAACTTTAGGTATTTTATAATTGAAATTAATTTGATGTATTTAATATTTGAGTTGTGTTTAGATATTATTTTCTTCCAAATGTGACTGTAAAATATTTGTCTCTAAGTACTGGTGAAAAgttgtgtcccccccccccaactgtaTCGACATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286820 lncRNA upstream 19403 11453221 ~ 11457561 (+) True LOC120550877
XR_005637798.1 lncRNA upstream 20280 11453228 ~ 11456684 (+) False LOC120550877
TU286510 lncRNA upstream 396554 11080115 ~ 11080410 (+) True G211417
TU286508 lncRNA upstream 399011 11073498 ~ 11077953 (+) False chac2
XR_005637787.1 lncRNA upstream 530321 10944929 ~ 10946643 (+) True LOC120550777
TU286879 lncRNA downstream 230496 11725141 ~ 11727426 (+) True G211665
TU286881 lncRNA downstream 238982 11733627 ~ 11735251 (+) True G211666
TU286929 lncRNA downstream 327159 11821804 ~ 11822046 (+) True G211706
TU286933 lncRNA downstream 344356 11839001 ~ 11839311 (+) True G211710
TU286934 lncRNA downstream 344899 11839544 ~ 11839743 (+) True G211711
XM_039787802.1 mRNA upstream 76386 11363355 ~ 11400578 (+) True LOC120550876
XM_039787174.1 mRNA upstream 232568 11242599 ~ 11244396 (+) True LOC120550580
XM_039787827.1 mRNA upstream 329581 11143384 ~ 11147383 (+) True LOC120550888
XM_039787819.1 mRNA upstream 335601 11121211 ~ 11141363 (+) True LOC120550886
XM_039789382.1 mRNA upstream 398957 11073477 ~ 11078007 (+) True chac2
XM_039787204.1 mRNA downstream 1937 11496582 ~ 11569280 (+) True LOC120550601
XM_039787206.1 mRNA downstream 76072 11570717 ~ 11576144 (+) False dhx32a
XM_039787205.1 mRNA downstream 76076 11570721 ~ 11577632 (+) True dhx32a
XM_039787211.1 mRNA downstream 84560 11579205 ~ 11583114 (+) True uros
XM_039787213.1 mRNA downstream 85674 11580319 ~ 11583114 (+) False uros
XR_005637797.1 other upstream 76386 11363355 ~ 11400578 (+) False LOC120550876
TU286461 other upstream 549738 10922448 ~ 10927226 (+) True cript
TU286458 other upstream 569647 10902704 ~ 10907317 (+) False LOC120551799
TU286436 other upstream 672992 10801340 ~ 10803972 (+) True G211354
TU286403 other upstream 751405 10723533 ~ 10725559 (+) True G211336
TU287023 other downstream 593040 12087685 ~ 12088135 (+) True G211777
XR_005637885.1 other downstream 1055932 12550577 ~ 12597021 (+) False LOC120551485
unassigned_transcript_1166 other downstream 1116176 12610821 ~ 12610902 (+) True trnal-aag_11
TU287259 other downstream 1226213 12720858 ~ 12809117 (+) False LOC120551603
TU287481 other downstream 1885571 13380216 ~ 13380934 (+) True G212108

Expression Profile