RNA id: XR_005637748.1


Basic Information

Item Value
RNA id XR_005637748.1
length 290
lncRNA type inter_gene
GC content 0.44
exon number 4
gene id LOC120550570
representative False

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 3787973 ~ 3790675 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTACATCGCCAATACATCGTGGCGACTGGAAGATCAGAAAACGTCGGCAGGAGGTGGGAGAGAAGGCAATGCAGAGATGAAGGACATCATACCACAATAATAGTTGTGTGTATAAGCCTGATCAACAAGTGAAAAGAGTCAGATAAGAGGAAAGAGTTTGAAAACTGATTTGACGACCGCTGCTGAATTGGCCTGCTAAGAGGAAGAGGCACTAATGATTCCAGAAGAGGAAGCCAAAGAAGAAGACCTACACAGACTTTGAAATGGaTCTCTCAATTGCCATGATGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283954 lncRNA upstream 265680 3469012 ~ 3523766 (+) True G209508
TU283947 lncRNA upstream 441346 3347898 ~ 3348100 (+) True G209501
TU283771 lncRNA upstream 588312 3110699 ~ 3201134 (+) True G209382
XR_005637753.1 lncRNA downstream 28426 3819101 ~ 3820620 (+) False LOC120550571
XR_005637752.1 lncRNA downstream 28426 3819101 ~ 3820616 (+) False LOC120550571
TU284122 lncRNA downstream 230986 4021661 ~ 4042686 (+) True G209650
XR_005637865.1 lncRNA downstream 294649 4085324 ~ 4087838 (+) True LOC120551338
TU284176 lncRNA downstream 392898 4183573 ~ 4186720 (+) True G209684
XM_039789071.1 mRNA upstream 101669 3670590 ~ 3687777 (+) True LOC120551587
XM_039789069.1 mRNA upstream 168267 3587079 ~ 3621179 (+) True LOC120551583
XM_039788750.1 mRNA upstream 1255983 2526662 ~ 2533463 (+) True LOC120551356
XM_039789064.1 mRNA upstream 1427087 2344346 ~ 2362359 (+) True LOC120551576
XM_039788394.1 mRNA upstream 1476997 2302291 ~ 2312449 (+) True LOC120551177
XM_039787170.1 mRNA downstream 38640 3829315 ~ 3832201 (+) True LOC120550572
XM_039789000.1 mRNA downstream 151706 3942381 ~ 3943422 (+) True atoh1c
XM_039788724.1 mRNA downstream 207698 3998373 ~ 4028282 (+) False LOC120551345
XM_039788723.1 mRNA downstream 207698 3998373 ~ 4028281 (+) True LOC120551345
XM_039788725.1 mRNA downstream 207698 3998373 ~ 4028281 (+) False LOC120551345
TU283964 other upstream 142449 3646009 ~ 3646997 (+) True G209514
TU283708 other upstream 955772 2779741 ~ 2833674 (+) False G209344
TU283706 other upstream 992311 2715645 ~ 2797135 (+) True G209344
TU283630 other upstream 1429144 2344281 ~ 2360302 (+) False LOC120551576
TU283626 other upstream 1455161 2332178 ~ 2334285 (+) True G209284
TU283994 other downstream 28178 3818853 ~ 3823251 (+) True LOC120550571
TU283997 other downstream 31224 3821899 ~ 3823251 (+) False LOC120550571
XR_005637866.1 other downstream 207698 3998373 ~ 4027498 (+) False LOC120551345
XR_005637777.1 other downstream 1800661 5591336 ~ 5687896 (+) False LOC120550763
XR_005637869.1 other downstream 2292760 6083435 ~ 6092738 (+) False kctd2

Expression Profile