RNA id: XR_005637793.1


Basic Information

Item Value
RNA id XR_005637793.1
length 776
lncRNA type inter_gene
GC content 0.53
exon number 4
gene id LOC120550855
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 7146421 ~ 7264824 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTCACCGGCCCAACATGTGTTTGTGCTTTACAGTGGTGGTCCTGTAGAGAGCGGTAGATAGTTTTAATAAGTGGTTACCCAGCCGAGCTCCCCTTACTGTACCGTACACAAGCGGAGGGAGGAGCGACCGTGTagtatttcttttttgcttCTTTCCCTCCTGTCGTTGCAGCACATCCAAACGCTACTTGAAGGCATCATAAAAAACGGGGGAACAAACAACTCATTTTCACGCAAAAGCTTGTTAGGAAGGAGGACAGGGATCGGTGTGATTTTTGGCAGTCCGAGCCGCAGCAGCTTAGCGGAGGACTGGGCTTCGGAGTGAGCGGGACGTGTAGGCGCTGCACACCGGAGGAGCTCTGCTGACTTTCTCCCGCTTCATTTCCGTCTAATGCCCAAATATCCAACCCGAACTGGTGTCCAGACCGCGTGGGGTTAACCGACGAGTTCCCTGAGAGCAACGTTGGGACGAAAGCTGGGATGAAATGTAAAGAAACAACACTGAAGTGAAGAAAACTGAAAACCAAGGGCGGAGACGAGGCGGACCATACAACGCAGGAGGCCTGGGGAAATCATTAACCGCACACAAACGCATGCAATATGACTGATTGGATCCCATTCCACTCTCCACATTCCTGGGACTGATATCCGCCTCAAGCCCCTGGCCGCAGTGCCAGTTGTAGACCTCCAACATCTTCCACACTTTGCAGCAGTTTCATAGCGAGCCCACCTCACCTCAGAAACCTCTGGAAACCCCCAccaccccacccctccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285296 lncRNA upstream 73905 7048464 ~ 7072516 (+) True G210544
TU285285 lncRNA upstream 105042 7037796 ~ 7041379 (+) False ormdl3
TU285266 lncRNA upstream 185984 6960204 ~ 6960437 (+) True G210523
TU285265 lncRNA upstream 186806 6957395 ~ 6959615 (+) False psmd11b
TU285240 lncRNA upstream 205189 6940371 ~ 6941232 (+) True G210505
TU285294 lncRNA downstream 45068 7309892 ~ 7311059 (+) True G210542
TU285295 lncRNA downstream 54427 7319251 ~ 7326748 (+) True G210543
TU285389 lncRNA downstream 384297 7649121 ~ 7650721 (+) True G210620
TU285417 lncRNA downstream 403886 7668710 ~ 7670981 (+) True G210641
TU285460 lncRNA downstream 467417 7732241 ~ 7737148 (+) True G210669
XM_039788585.1 mRNA upstream 103213 7030819 ~ 7043208 (+) True ormdl3
XM_039788586.1 mRNA upstream 103213 7030819 ~ 7043208 (+) False ormdl3
XM_039788587.1 mRNA upstream 111996 7030818 ~ 7034425 (+) False ormdl3
XM_039788634.1 mRNA upstream 153333 6961574 ~ 6993088 (+) False LOC120551313
XM_039787751.1 mRNA downstream 22 7264846 ~ 7302723 (+) False LOC120550851
XM_039787754.1 mRNA downstream 22 7264846 ~ 7302723 (+) False LOC120550851
XM_039787756.1 mRNA downstream 22 7264846 ~ 7301253 (+) False LOC120550851
XM_039787755.1 mRNA downstream 11287 7276111 ~ 7302723 (+) False LOC120550851
XM_039787752.1 mRNA downstream 11288 7276112 ~ 7302723 (+) True LOC120550851
TU284934 other upstream 674266 6470656 ~ 6472155 (+) True G210266
XR_005637869.1 other upstream 1053683 6083435 ~ 6092738 (+) False kctd2
XR_005637777.1 other upstream 1458525 5591336 ~ 5687896 (+) False LOC120550763
XR_005637866.1 other upstream 3118923 3998373 ~ 4027498 (+) False LOC120551345
TU283997 other upstream 3323170 3821899 ~ 3823251 (+) False LOC120550571
TU285573 other downstream 792919 8057743 ~ 8062269 (+) True dydc2
XR_005637922.1 other downstream 934741 8199565 ~ 8199679 (+) True LOC120551817
unassigned_transcript_1162 other downstream 1336354 8601178 ~ 8601248 (+) True trnag-ccc_1
XR_005637919.1 other downstream 1777822 9042646 ~ 9046468 (+) False LOC120551795
TU285955 other downstream 2308291 9573115 ~ 9576418 (+) True rpl38

Expression Profile