RNA id: XR_005637921.1



Basic Information


Item Value
RNA id XR_005637921.1
length 114
RNA type snRNA
GC content 0.37
exon number 1
gene id LOC120551816
representative True

Chromosome Information


Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 10217108 ~ 10217221 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TCACTCttgtttctcttcagatcgtatAAATCTTTCGCCTTTTACTAAAGATTTCCGTGGAGAGGAACAATAAGAGTTTTAACTAATTTTTTGATGCCCTACTTCTGTGGGGCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_005637849.1 lncRNA upstream 28135 10186917 ~ 10188973 (+) True LOC120551242
TU286152 lncRNA upstream 51582 10165143 ~ 10165526 (+) True G211182
TU286151 lncRNA upstream 53430 10163382 ~ 10163678 (+) True G211181
TU286145 lncRNA upstream 77066 10139781 ~ 10140042 (+) True G211175
XR_005637846.1 lncRNA upstream 80458 10135925 ~ 10136650 (+) True LOC120551238
TU286273 lncRNA downstream 26396 10243617 ~ 10244815 (+) True G211256
TU286274 lncRNA downstream 26396 10243617 ~ 10244815 (+) False G211256
TU286289 lncRNA downstream 72358 10289579 ~ 10329262 (+) False socs3b
TU286341 lncRNA downstream 232458 10449679 ~ 10456084 (+) False G211301
TU286342 lncRNA downstream 236412 10453633 ~ 10531279 (+) False G211301
XM_039788490.1 mRNA upstream 127030 10084571 ~ 10090078 (+) False LOC120551228
XM_039788489.1 mRNA upstream 127030 10084571 ~ 10090078 (+) False LOC120551228
XM_039788491.1 mRNA upstream 127513 10084571 ~ 10089595 (+) True LOC120551228
XM_039788495.1 mRNA upstream 136482 10077191 ~ 10080626 (+) True srsf2a
XM_039788460.1 mRNA downstream 5102 10222323 ~ 10233271 (+) True trim8b
XM_039788492.1 mRNA downstream 30477 10247698 ~ 10255361 (+) True sfxn2
XM_039788494.1 mRNA downstream 38853 10256074 ~ 10268624 (+) True timp2a
XM_039788472.1 mRNA downstream 63403 10280624 ~ 10298425 (+) False LOC120551220
XM_039788475.1 mRNA downstream 65822 10283043 ~ 10298425 (+) False LOC120551220
XR_005637923.1 other upstream 629 10216365 ~ 10216479 (+) True LOC120551818
TU286128 other upstream 151982 10062785 ~ 10065126 (+) True G211164
TU286110 other upstream 154406 10053261 ~ 10062702 (+) True G211151
XR_005637867.1 other upstream 318599 9884371 ~ 9898509 (+) False qki2
XR_005637868.1 other upstream 318599 9884371 ~ 9898509 (+) False qki2
unassigned_transcript_1164 other downstream 146611 10363832 ~ 10363913 (+) True trnal-aag_10
TU286340 other downstream 239018 10456239 ~ 10460499 (+) True G211301
XR_005637805.1 other downstream 347031 10564252 ~ 10621412 (+) True usp54b
TU286397 other downstream 485745 10702966 ~ 10715226 (+) True sncgb
TU286398 other downstream 485745 10702966 ~ 10715226 (+) False sncgb