RNA id: unassigned_transcript_1164


Basic Information

Item Value
RNA id unassigned_transcript_1164
length 82
RNA type tRNA
GC content 0.65
exon number 1
gene id trnal-aag_10
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 10363832 ~ 10363913 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTAGCGTGGCCGAGCGGTCTAAGGCGCTGGATTAAGGCTCCAGTCTCTTCGGGGgcgtgggttcgaatcccaccGCTGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286289 lncRNA upstream 34570 10289579 ~ 10329262 (+) False socs3b
TU286273 lncRNA upstream 119017 10243617 ~ 10244815 (+) True G211256
TU286274 lncRNA upstream 119017 10243617 ~ 10244815 (+) False G211256
XR_005637849.1 lncRNA upstream 174859 10186917 ~ 10188973 (+) True LOC120551242
TU286152 lncRNA upstream 198306 10165143 ~ 10165526 (+) True G211182
TU286341 lncRNA downstream 85766 10449679 ~ 10456084 (+) False G211301
TU286342 lncRNA downstream 89720 10453633 ~ 10531279 (+) False G211301
TU286356 lncRNA downstream 142413 10506326 ~ 10508324 (+) False G211306
TU286357 lncRNA downstream 142413 10506326 ~ 10508324 (+) True G211306
TU286372 lncRNA downstream 200333 10564246 ~ 10586097 (+) False usp54b
XM_039788431.1 mRNA upstream 1929 10345865 ~ 10361903 (+) False eef2k
XM_039788430.1 mRNA upstream 1929 10346466 ~ 10361903 (+) True eef2k
XM_039788433.1 mRNA upstream 1929 10346466 ~ 10361903 (+) False eef2k
XM_039788434.1 mRNA upstream 1929 10346467 ~ 10361903 (+) False eef2k
XM_039788432.1 mRNA upstream 1929 10346467 ~ 10361903 (+) False eef2k
XM_039788501.1 mRNA downstream 143 10364056 ~ 10381441 (+) True polr3e
XM_039788429.1 mRNA downstream 39531 10403444 ~ 10435775 (+) True LOC120551201
XM_039788481.1 mRNA downstream 129229 10493142 ~ 10497988 (+) True LOC120551223
XM_039788426.1 mRNA downstream 135570 10499483 ~ 10505760 (+) True LOC120551199
XM_039788427.1 mRNA downstream 135866 10499779 ~ 10505760 (+) False LOC120551199
XR_005637921.1 other upstream 146611 10217108 ~ 10217221 (+) True LOC120551816
XR_005637923.1 other upstream 147353 10216365 ~ 10216479 (+) True LOC120551818
TU286128 other upstream 298706 10062785 ~ 10065126 (+) True G211164
TU286110 other upstream 301130 10053261 ~ 10062702 (+) True G211151
XR_005637867.1 other upstream 465323 9884371 ~ 9898509 (+) False qki2
TU286340 other downstream 92326 10456239 ~ 10460499 (+) True G211301
XR_005637805.1 other downstream 200339 10564252 ~ 10621412 (+) True usp54b
TU286397 other downstream 339053 10702966 ~ 10715226 (+) True sncgb
TU286398 other downstream 339053 10702966 ~ 10715226 (+) False sncgb
TU286399 other downstream 339053 10702966 ~ 10715354 (+) False sncgb