RNA id: TU294026


Basic Information

Item Value
RNA id TU294026
length 271
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G217218
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 157591 ~ 157861 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcagcgggtgtgggagaagtttggagaagacatggagaaggactttcggtcggcaccaaagtgcttctggaaaactgtttgccacctcaggagggggaagcggggaaccatccaagctgtgtacagtaaggatgggacactgttgacctcaactgaggaggtaatagggcggtggaaggagcattttgaggaactcctgaatccgactaatacgccctctatgttagaggcagagctggaggatgacgggggattgtcgtcgatttcccgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU293997 lncRNA upstream 95075 58154 ~ 62516 (+) True LOC120551969
XR_005637944.1 lncRNA upstream 95102 58150 ~ 62489 (+) False LOC120551969
TU293995 lncRNA upstream 107199 47771 ~ 50392 (+) True G217193
TU294028 lncRNA downstream 55997 213858 ~ 214057 (+) True G217220
TU294030 lncRNA downstream 56258 214119 ~ 214795 (+) True G217222
TU294031 lncRNA downstream 96789 254650 ~ 254954 (+) True G217223
TU294038 lncRNA downstream 289647 447508 ~ 448012 (+) True G217230
TU294044 lncRNA downstream 398184 556045 ~ 563384 (+) True G217236
XM_039790915.1 mRNA downstream 295514 453375 ~ 454535 (+) True LOC120552693
XM_039789600.1 mRNA downstream 1304889 1462750 ~ 1505215 (+) True zcchc2
XM_039789602.1 mRNA downstream 1304889 1462750 ~ 1505215 (+) False zcchc2
XM_039789601.1 mRNA downstream 1304889 1462750 ~ 1500554 (+) False zcchc2
XM_039789603.1 mRNA downstream 1365533 1523394 ~ 1529309 (+) True LOC120551998
unassigned_transcript_1215 other downstream 1411526 1569387 ~ 1569454 (+) True trnaq-uug_4
unassigned_transcript_1216 other downstream 1413802 1571663 ~ 1571745 (+) True trnal-cag_5
unassigned_transcript_1217 other downstream 1414292 1572153 ~ 1572224 (+) True trnaq-cug_17
unassigned_transcript_1218 other downstream 1415290 1573151 ~ 1573233 (+) True trnal-cag_6
unassigned_transcript_1219 other downstream 1415781 1573642 ~ 1573713 (+) True trnaq-cug_18

Expression Profile