RNA id: TU294040


Basic Information

Item Value
RNA id TU294040
length 578
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G217232
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 500761 ~ 501338 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

attggctatttcaaacttttttaacaaataaaaaactgaaaaagtgggcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatagaatccagctgtgtgtaatcaagtctccgtataaatgcacctgctctgtgatagtctcagaggtccgtgtaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtggagaagtttaaagccggatttggatacaaaaagatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactacaaatctatgaagacccggccgtccctctaaactttcagctcatacaatgagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggcgggagactctgtccataggacaacaatcagtcgtatactgcacaaatctggcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294039 lncRNA downstream 52751 447784 ~ 448010 (-) True G217231
TU294037 lncRNA downstream 90616 409398 ~ 410145 (-) True G217229
TU294029 lncRNA downstream 286704 213858 ~ 214057 (-) True G217221
TU294027 lncRNA downstream 342196 157558 ~ 158565 (-) True G217219
XR_005637947.1 lncRNA downstream 397764 102140 ~ 102997 (-) True LOC120551975
TU294046 lncRNA upstream 54811 556149 ~ 563293 (-) True G217238
TU294048 lncRNA upstream 65328 566666 ~ 577547 (-) True G217240
TU294049 lncRNA upstream 65328 566666 ~ 577211 (-) False G217240
TU294050 lncRNA upstream 81361 582699 ~ 582933 (-) True G217241
TU294059 lncRNA upstream 192166 693504 ~ 694424 (-) True G217247
XM_039790874.1 mRNA downstream 98935 294311 ~ 401826 (-) True vstm2a
XM_039789542.1 mRNA upstream 697271 1198609 ~ 1200210 (-) True LOC120551945
XM_039789537.1 mRNA upstream 820100 1321438 ~ 1332410 (-) True LOC120551939
XM_039789599.1 mRNA upstream 854150 1355488 ~ 1448275 (-) True si:dkey-225n22.4
XM_039789605.1 mRNA upstream 1006398 1507736 ~ 1536190 (-) True ift74
XM_039789961.1 mRNA upstream 1156834 1658172 ~ 1811130 (-) True LOC120552169
unassigned_transcript_1299 other upstream 2808161 3309499 ~ 3309570 (-) True trnag-ucc_41
XR_005638064.1 other upstream 2815110 3316448 ~ 3343705 (-) False LOC120552696
unassigned_transcript_1300 other upstream 3073393 3574731 ~ 3574828 (-) True trnar-ucu_17
unassigned_transcript_1301 other upstream 3073738 3575076 ~ 3575173 (-) True trnar-ucu_18
unassigned_transcript_1302 other upstream 3074424 3575762 ~ 3575859 (-) True trnar-ucu_19

Expression Profile