RNA id: TU294048


Basic Information

Item Value
RNA id TU294048
length 1033
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G217240
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 566666 ~ 577547 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttttttatttttttattaatcagcaaaatattgacatatgggaagcctactttgtctaactactcctgggacgtgagtccgatcggcacgaaaacttgcaAGTAGACACGGAGGACCCTCAtgaaaaaaagttatcaaaagaatattgatagctaacacaatgcacaagttacggaggaccaacttcctgtaggtgggtgtggaaacaggaacggttgtatcttgcCAACGGCTATTCCAATGGATGCAAAACTTAGAgcagttgttcctcatgtgctaatgaggctgtgtgccaaatatggtgacaatcggcctttagatggcgctgttttcatttttcttttattaattagcAAATTTACACGATGCCATGTAGTAAACAATACAGGTTATTACGCAGTTACATCTATTgaccactagatggtgctctaAGACCACAAATGAACATAACAGCAACATACAGGTACAATAGTCATGTGACAGACCAGCGGCGCGAATGGCACAGTGCAATGCGCTTCAACAATTAAACCAGCAACAACATCGCGAGTGCAGCAGCTGAACTAATCATCAGCAGGATTGTAATTAACTAATGTACCACACTGTACTAACATACATCCATGAATCAAAGTATTAACTATTGTTTCTGAATGATATATTTGCAGTAAGTTCCCAGCATTACAGTAGACATAAGCATGCATCCTGAActataataaagaaaaatactttcatgttaattacacaaacaaagaTACATGCAACATGAAATTGTGCACTTACGTTTTCAATAACGCACACGGCAACACAACAGAATGCTATACAAGTAACGTGCAACTATAGGAGCAACTGTACTCATGTCTGCAGCGAACTACAAAAGGAAATGGCTAAGTTGCGCATGTGCGCAAATGCGTGAGTCCAACAGGTGACGTTGTCTCAGTCCAGCAGGGAGTTTTCCACAGGTTgcatcttggcaaaagttattccgatttacatgaaacttacaAGGTGTGGACTACACGTGATGTTGCGTCTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294046 lncRNA downstream 3373 556149 ~ 563293 (-) True G217238
TU294040 lncRNA downstream 65328 500761 ~ 501338 (-) True G217232
TU294039 lncRNA downstream 118656 447784 ~ 448010 (-) True G217231
TU294037 lncRNA downstream 156521 409398 ~ 410145 (-) True G217229
TU294029 lncRNA downstream 352609 213858 ~ 214057 (-) True G217221
TU294050 lncRNA upstream 5152 582699 ~ 582933 (-) True G217241
TU294059 lncRNA upstream 115957 693504 ~ 694424 (-) True G217247
TU294071 lncRNA upstream 207724 785271 ~ 785573 (-) True G217259
TU294080 lncRNA upstream 287023 864570 ~ 864800 (-) True G217267
TU294152 lncRNA upstream 776678 1354225 ~ 1354503 (-) True G217330
XM_039790874.1 mRNA downstream 164840 294311 ~ 401826 (-) True vstm2a
XM_039789542.1 mRNA upstream 621062 1198609 ~ 1200210 (-) True LOC120551945
XM_039789537.1 mRNA upstream 743891 1321438 ~ 1332410 (-) True LOC120551939
XM_039789599.1 mRNA upstream 777941 1355488 ~ 1448275 (-) True si:dkey-225n22.4
XM_039789605.1 mRNA upstream 930189 1507736 ~ 1536190 (-) True ift74
XM_039789961.1 mRNA upstream 1080625 1658172 ~ 1811130 (-) True LOC120552169
unassigned_transcript_1299 other upstream 2731952 3309499 ~ 3309570 (-) True trnag-ucc_41
XR_005638064.1 other upstream 2738901 3316448 ~ 3343705 (-) False LOC120552696
unassigned_transcript_1300 other upstream 2997184 3574731 ~ 3574828 (-) True trnar-ucu_17
unassigned_transcript_1301 other upstream 2997529 3575076 ~ 3575173 (-) True trnar-ucu_18
unassigned_transcript_1302 other upstream 2998215 3575762 ~ 3575859 (-) True trnar-ucu_19

Expression Profile