RNA id: TU294050


Basic Information

Item Value
RNA id TU294050
length 235
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G217241
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 582699 ~ 582933 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cgcaggcagtgtgtaagctctaacctgttaacataggagccgaaatataaacggacacgccacgcagctgacacgctcgcgcgacgcatccagtgtgtaaccggcctaagtcATTGCCGCAGCAACTGCGGGCTCAATTCTGACCcatggccctttgctgcatgtcattgcccccctctctccccctttcctgtttttagctgtcctatctaataaaggcctaaaatgcccaaat

Function

GO: NA

KEGG:

id description
ko04391 Hippo signaling pathway - fly
ko04214 Apoptosis - fly

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294048 lncRNA downstream 5152 566666 ~ 577547 (-) True G217240
TU294049 lncRNA downstream 5488 566666 ~ 577211 (-) False G217240
TU294046 lncRNA downstream 19406 556149 ~ 563293 (-) True G217238
TU294040 lncRNA downstream 81361 500761 ~ 501338 (-) True G217232
TU294039 lncRNA downstream 134689 447784 ~ 448010 (-) True G217231
TU294059 lncRNA upstream 110571 693504 ~ 694424 (-) True G217247
TU294071 lncRNA upstream 202338 785271 ~ 785573 (-) True G217259
TU294080 lncRNA upstream 281637 864570 ~ 864800 (-) True G217267
TU294152 lncRNA upstream 771292 1354225 ~ 1354503 (-) True G217330
TU294158 lncRNA upstream 772324 1355257 ~ 1355603 (-) False si:dkey-225n22.4
XM_039790874.1 mRNA downstream 180873 294311 ~ 401826 (-) True vstm2a
XM_039789542.1 mRNA upstream 615676 1198609 ~ 1200210 (-) True LOC120551945
XM_039789537.1 mRNA upstream 738505 1321438 ~ 1332410 (-) True LOC120551939
XM_039789599.1 mRNA upstream 772555 1355488 ~ 1448275 (-) True si:dkey-225n22.4
XM_039789605.1 mRNA upstream 924803 1507736 ~ 1536190 (-) True ift74
XM_039789961.1 mRNA upstream 1075239 1658172 ~ 1811130 (-) True LOC120552169
unassigned_transcript_1299 other upstream 2726566 3309499 ~ 3309570 (-) True trnag-ucc_41
XR_005638064.1 other upstream 2733515 3316448 ~ 3343705 (-) False LOC120552696
unassigned_transcript_1300 other upstream 2991798 3574731 ~ 3574828 (-) True trnar-ucu_17
unassigned_transcript_1301 other upstream 2992143 3575076 ~ 3575173 (-) True trnar-ucu_18
unassigned_transcript_1302 other upstream 2992829 3575762 ~ 3575859 (-) True trnar-ucu_19

Expression Profile