RNA id: TU294080


Basic Information

Item Value
RNA id TU294080
length 231
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G217267
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 864570 ~ 864800 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agaatgcaaaaccgattttaccctgtcatagttgaataacgacagttcggtgggtaaataggacatacatagaagctcaaagtcccattgacacccctttactatgaaaatctcatattttgaaactgccgctgaaaacgggcgaatcccaacaaagctgagttgcttacgcaagcatctcaaaatccggaaccttaagagaacagtcacgccccaacatttacataggct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294071 lncRNA downstream 78997 785271 ~ 785573 (-) True G217259
TU294059 lncRNA downstream 170146 693504 ~ 694424 (-) True G217247
TU294050 lncRNA downstream 281637 582699 ~ 582933 (-) True G217241
TU294048 lncRNA downstream 287023 566666 ~ 577547 (-) True G217240
TU294049 lncRNA downstream 287359 566666 ~ 577211 (-) False G217240
TU294152 lncRNA upstream 489425 1354225 ~ 1354503 (-) True G217330
TU294158 lncRNA upstream 490457 1355257 ~ 1355603 (-) False si:dkey-225n22.4
TU294257 lncRNA upstream 885563 1750363 ~ 1811052 (-) False LOC120552169
TU294265 lncRNA upstream 885563 1750363 ~ 1811052 (-) False LOC120552169
TU294267 lncRNA upstream 885563 1750363 ~ 1811052 (-) False LOC120552169
XM_039790874.1 mRNA downstream 462744 294311 ~ 401826 (-) True vstm2a
XM_039789542.1 mRNA upstream 333809 1198609 ~ 1200210 (-) True LOC120551945
XM_039789537.1 mRNA upstream 456638 1321438 ~ 1332410 (-) True LOC120551939
XM_039789599.1 mRNA upstream 490688 1355488 ~ 1448275 (-) True si:dkey-225n22.4
XM_039789605.1 mRNA upstream 642936 1507736 ~ 1536190 (-) True ift74
XM_039789961.1 mRNA upstream 793372 1658172 ~ 1811130 (-) True LOC120552169
unassigned_transcript_1299 other upstream 2444699 3309499 ~ 3309570 (-) True trnag-ucc_41
XR_005638064.1 other upstream 2451648 3316448 ~ 3343705 (-) False LOC120552696
unassigned_transcript_1300 other upstream 2709931 3574731 ~ 3574828 (-) True trnar-ucu_17
unassigned_transcript_1301 other upstream 2710276 3575076 ~ 3575173 (-) True trnar-ucu_18
unassigned_transcript_1302 other upstream 2710962 3575762 ~ 3575859 (-) True trnar-ucu_19

Expression Profile