RNA id: TU294081


Basic Information

Item Value
RNA id TU294081
length 253
lncRNA type inter_gene
GC content 0.60
exon number 3
gene id G217268
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 886018 ~ 1348824 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gggagcagcagtcagtagaagggagcagcagtcagtagaggggagcagcagtcagtagaggggagcagcagtcagtagaggggagcagcagtcagtaggagggagcagcagtcagtagaggggagcagcagtcagtagaggggagcagcagtcagtagaggggagcagcagtcagtagaggggagcagcagtcagtagaggggagcagcagtcagtagaggggagcagcagtcagtagaggggagcagcagtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637948.1 lncRNA upstream 31146 852609 ~ 854872 (+) True LOC120551977
TU294062 lncRNA upstream 170698 715121 ~ 715320 (+) True G217250
TU294058 lncRNA upstream 196673 689102 ~ 689345 (+) True G217246
XR_005638009.1 lncRNA upstream 278730 597236 ~ 607288 (+) True LOC120552453
TU294051 lncRNA upstream 278837 597229 ~ 607181 (+) False LOC120552453
TU294145 lncRNA downstream 3336 1352160 ~ 1353584 (+) True G217326
TU294167 lncRNA downstream 153405 1502229 ~ 1505183 (+) False zcchc2
TU294175 lncRNA downstream 168670 1517494 ~ 1521537 (+) True G217352
TU294213 lncRNA downstream 304353 1653177 ~ 1716771 (+) False G217378
TU294214 lncRNA downstream 304353 1653177 ~ 1731066 (+) True G217378
XM_039790915.1 mRNA upstream 431483 453375 ~ 454535 (+) True LOC120552693
XM_039789600.1 mRNA downstream 113926 1462750 ~ 1505215 (+) True zcchc2
XM_039789602.1 mRNA downstream 113926 1462750 ~ 1505215 (+) False zcchc2
XM_039789601.1 mRNA downstream 113926 1462750 ~ 1500554 (+) False zcchc2
XM_039789603.1 mRNA downstream 174570 1523394 ~ 1529309 (+) True LOC120551998
XM_039789604.1 mRNA downstream 174570 1523394 ~ 1529309 (+) False LOC120551998
unassigned_transcript_1215 other downstream 220563 1569387 ~ 1569454 (+) True trnaq-uug_4
unassigned_transcript_1216 other downstream 222839 1571663 ~ 1571745 (+) True trnal-cag_5
unassigned_transcript_1217 other downstream 223329 1572153 ~ 1572224 (+) True trnaq-cug_17
unassigned_transcript_1218 other downstream 224327 1573151 ~ 1573233 (+) True trnal-cag_6
unassigned_transcript_1219 other downstream 224818 1573642 ~ 1573713 (+) True trnaq-cug_18

Expression Profile