RNA id: TU294213


Basic Information

Item Value
RNA id TU294213
length 3720
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G217378
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 1653177 ~ 1731066 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCcgttttatttcatgttcaaTAATCACATCACTAATTAACAAGTAATCACAATAAACACTTTTTTccaaaccaaaaaataaaattctaattaatgaaaaaaacaacaacacaaaaaacaatgaGGAGCTTCTGCGAATGACATAGTAAGTCTACCTAACACATCccattgttgtttttcagcATGCTCTGCAGGTACAGTAGGTGTTTATTAGATAGTGTTACTCTTGCGTGAGTGCAGTGGCGGTAGATGAAGCTCTAGCTACAACACTCCTTGGATAGATTACTGAGGAGCATTTTGGACACAAGCCAAACCTGACAACTACAGTTAGTTAACCTTAGACAAGGATGTGTTAGGGTCTTGGTGTTTGTGACTCTCCAGGGCAAGTTGCTGTTGTTTCAGTGCTATATGTAGCAGCCAATATGTTTGATATACAGTGCTCCCAAATTACAGGCCTACACATTGACCTTTACACTTAGTGCCGCTTGAACAAAAAATTCTCTTTTGCCCACTGTGATATACGTACAGTGTCATGTGTTTCAGgtatgttaactttagtccgCTTGGTTCTTTTATCATATGAATCTGTGTCCTGAATGAGAAGTATACCGGATAGTCTGAACATTATTCTTATCACTTAAGACTGGGCTTGCAGGCATGATTCAATAGTGTATCGGGATAATTGTGCActacaaatttaaattaaaaatgtattaatcaaGGTCTATGTTGCCAGTTCAACATTACTGTATCAGGCTGCCATTACagcgctttaaataaaatgatattTAACAAGATAATAAAGACTTTCTAAGTGTTGTTTTGGGGTTTAAATCTTGTCTTGCACATCCTTGAAAAAAACTCCAGGACACAGTTTGAGAAACTGGCTGTAACAAATCAAAGGTGTAATCCCTTCAACTATGAGAGCACAACCACCACAAGGCTACAGGAACACAACGataaatacatatacaaaagTGTTGCGTCTTTAGTACAGTATATCTCAAAAGACATTCTTTCACTTCAGTGGACCCTTTCTAACGAAAAAGGCAGACTTTTTCAATTCATCATACTAATAATCagaataatagtcataatagtCATGATAAAACGCTCCCTTCCCTCTTAACCaataaaaggagaaaaaaaggacaaTGGACATAAAAGCTGTTCTGAACAAACTTTGAAACCCCCGCCCACCAAACCTCCCTGATGCTGTCATCATACTGTGTTTCGTTGTTTTTTAGGGTCATAAAGAGTGCATCAActgtaaaatatttatatacatcCGTGTGCAATCTCAATTGTAGTGGTAAGGAAAAACTATGGGGCAAGAGCAAAGCTCAAACGTGGTTGTGGACAGGCACAAGAAAATATTTTGCTATGTGACAGCCGTGGCACAAACAAAGCAATTTAACTATTTGATGACATCTGCTCTTTTAGCAACACTCAATCCTCAACAGCAGAAAAGAACTCCAACATCTGCATGTGAAACATTCCCACTTTCAGAAGACATTAATGAGAAGTTATTGCGCTTTTTATAAAACTGGATCTTTCGTAAAAAGCTTTGTTTTCTTATATAAAATTTAAAGGGATtccaatacaaaacaaaataatgactGAATCTAAATTGAACTGTTTAATGCGGGGAAATAAGGGCACTGTAATTCAGTTTATTGCTCTATTCATGTCATCACGTAAAATCTCATTCATAATTAAGCTATTTGGGATCACTTGTTCATAGCGGGGTGTTTATTAACACATGTTGCCTGTTACTCAAATACCAACACTCTTTGATATATTAAAGCATTAAGGTGCAATTTTGTAATGTCTTAACAAATATTTGCTAAAGTGACAATTTGAATAAGAAAGAATCGGAGTGTTTCATCTTGTCTCTAGGGGGCAGTCAATGGAGCTTTTGTCTTaaaactgaatttaaaaaaataaatgtctgcAAAGTCATTTGTCATTATCTCACTTGCTTTTCATTATTTGAAAGAATTGTAAAGAAAATGAAGTTTGCAAACCCAACCAAAACTGGAAGTAATTTTATGCTATTTTACTCGATATCTATATCTAGCGCTGGTTATTGAAGTTTGATAATTTATTGGTATCAACCGAAATGTGTCAACAGCACCAAGTATGGAGAAGTTAAACTAAATGTTGGCATCAAATGTTGTTTAGATTCTTAATCTTCTTTACGTATTATTTGATTCaatgttttcatatttaaatCAAAATGTAGATTTTAGAACTGTGTTTTACTTAGGCAAAGTCTTATGTGGCTGCTCGTGTTTAGaaaatatttaacatttgaGAAGTTTGGCTTCTTTGGAAAGAaggtatttgttaaaaaaattaaaagtttatATTCCAAAAAGTTAAAGCTGCAagaatcaatatttttgtaTGAACAATGGGCCAAACGACTTTAGCATCTTCCAGCtcactgttttggttttacgTGCCACAATTTTACCATTTGGTTCAGTCTCACCTCTCTCATTAACCAATGTTCCAGCCACATCAGGCAGCGAAAAGGTTCAGACAAACCCAAAGTAGGCTACCTGCCCATCACCAAACGCCTTaaaagcagacagacaaagttagcagcGAGATGGTGAACATAGCTTTTTGCAGCGCaagacagatatttccctcaggagttgttAGAGACCAAACCAAAGGAGATGGAATATTAGACTTACATTCAGAAGGTGGACAGAGACACGACTCCAAataaatgataatgttgctctgtcACTCATGGACAAATAAAGAGGCAATAGGCTGTTTGCTAACACGTTTGCCATAACAACTTCATAAAGTTATAATACGTCTATTCTAAGATGTAGATCTATACATCTACGTCTAAAAATGATGCAGGTTTAAGATGTCCACAAAATAAACTTCTGTCATCCATCTTTGTATATTTGAGCGATGGAATCATTAGTGTACAAATGTGCAACTAGTTTGAAGCAGAATAATTAATGATGAAACTAAGAGGTGAAACAACAACCATCAGAAACAAGCTCTATCTGTCCATtggtgataaaagtcataatttgaGTAACCACACATCATCAACTGTCTAGGATTGCCCCAGAGATATTCATATGGTACCAAACCACAACACTTTGAGTCATAATGCACAAAGGCTTTCAGCTCTGGGCATGATACTATATAATCTGGCCATGCATTATAAAGGCAATTAGAGGCAACTGTTGCTACAGAGAAGAGTATAAAGCCACATCATGTTCCACTGCCAATAAGTCAACAAGAAAAGTGCCGAAAATATTTTAGAGATGTTTTTGTATTCAGCTACTGTCGACCAACATGCTACCATAACCCCTTATAGAAACACCTGAAATGCAACAACAACCATGACAACACAACTACCAGGACAGCTTGATTTACAGAATTTACTTAAAACGACAATACCAGGTTGCCCCTAATGTTTTATGTCACGTTTGTCAACTATGCTATTCTCTTTGTCTGAGCAGTTTTAGGCATTAGCCTGCGCCATCCTCGTTTACTGTAGTTTTCAGGTAAGAAGGACAGGAGGCACGTACGAGACACACAGCTTCTTTGACTTCAGAGATCTTCCTCATCTCCATCTGGACTGCACGCTCAGTTAAAGCTTTTCTACTTAAGCAAACTTCCCCAATTGCATTTCAAAAATTTTCAGGTTTCAacctcttgttttttttTTTGTTTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294175 lncRNA upstream 131640 1517494 ~ 1521537 (+) True G217352
TU294167 lncRNA upstream 147994 1502229 ~ 1505183 (+) False zcchc2
TU294145 lncRNA upstream 299593 1352160 ~ 1353584 (+) True G217326
TU294081 lncRNA upstream 304353 886018 ~ 1348824 (+) True G217268
XR_005637948.1 lncRNA upstream 798305 852609 ~ 854872 (+) True LOC120551977
TU294222 lncRNA downstream 33702 1750473 ~ 1835068 (+) True G217384
TU294227 lncRNA downstream 87048 1803819 ~ 1830678 (+) True G217389
TU294252 lncRNA downstream 351532 2068303 ~ 2069213 (+) True LOC120552171
XR_005637967.1 lncRNA downstream 351538 2068309 ~ 2069213 (+) False LOC120552171
TU294298 lncRNA downstream 490480 2207251 ~ 2207564 (+) True G217444
XM_039789603.1 mRNA upstream 123868 1523394 ~ 1529309 (+) True LOC120551998
XM_039789604.1 mRNA upstream 123868 1523394 ~ 1529309 (+) False LOC120551998
XM_039789600.1 mRNA upstream 147962 1462750 ~ 1505215 (+) True zcchc2
XM_039789602.1 mRNA upstream 147962 1462750 ~ 1505215 (+) False zcchc2
XM_039789601.1 mRNA upstream 152623 1462750 ~ 1500554 (+) False zcchc2
XM_039789614.1 mRNA downstream 542149 2258920 ~ 2313426 (+) True LOC120552004
XM_039789617.1 mRNA downstream 709389 2426160 ~ 2438599 (+) False aoc1
XM_039789618.1 mRNA downstream 709423 2426194 ~ 2438599 (+) True aoc1
XM_039789655.1 mRNA downstream 741888 2458659 ~ 2558626 (+) False slc12a7b
XM_039789657.1 mRNA downstream 741888 2458659 ~ 2558626 (+) False slc12a7b
unassigned_transcript_1282 other upstream 1529 1651577 ~ 1651648 (+) True trnan-guu_46
unassigned_transcript_1281 other upstream 2037 1651067 ~ 1651140 (+) True trnan-guu_45
unassigned_transcript_1280 other upstream 3506 1649598 ~ 1649671 (+) True trnan-guu_44
unassigned_transcript_1279 other upstream 4549 1648555 ~ 1648628 (+) True trnan-guu_43
unassigned_transcript_1278 other upstream 5074 1648030 ~ 1648103 (+) True trnan-guu_42
TU294514 other downstream 1289512 3006283 ~ 3021642 (+) True G217606
unassigned_transcript_1283 other downstream 1450972 3167743 ~ 3167824 (+) True trnas-aga_12
unassigned_transcript_1284 other downstream 1452016 3168787 ~ 3168858 (+) True trnag-ucc_35
unassigned_transcript_1285 other downstream 1452314 3169085 ~ 3169166 (+) True trnas-aga_13
unassigned_transcript_1286 other downstream 1464527 3181298 ~ 3181369 (+) True trnag-ucc_36

Expression Profile