RNA id: TU294222


Basic Information

Item Value
RNA id TU294222
length 2417
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G217384
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 1750473 ~ 1835068 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gagtgtgtgttaaaTATCCATTTATTAGCAAAAAGTGCAGGCGGACAACAGAGAGAGGCACGTCTATAAAAAGGATTCTGAGATAGATACCTTTtggaacaaacacacaaaataggCTGGATCTAAACCTTGTGGCACACATAGGACGTTTGCATAATGCATCTAGTAAGTAAAATtgccaaaatcaaaaaaataaaatacagtacagtacagtacatctcACCGCAGGGTGAAAGATCTTCTCAACTAGTGTGTCTGTAGCTCACCCTGACGGCTGTGAATATCTCTACGGAAGCCTTCAATGATCTTCTGTCCATTTACAGCTAGGAGAAGATCCGAGGAGTATTACACGTGTTACAAGTGCTGCTGTGCCTGCTATAAATCCACAGATGGTAGTGTGTTCATGTACAAATCACACTTTTCCCACTTTGAAATTTCATTCTGCTAGGCCAATGACTTGTTACATGAAAGAAAACAGCCCTGTTGGCAAGCCACAGAACATTACTACGCCTCATTCACAAATGTTTCACATTCACAAAGGGTCAGTTCAACCAAATACTAATGCTGCCAATATAATGGAGGTGAACTGATCCTGGTATTAGATCCATACGCCTCTCCGTCAACAGTTTTCACAGGGACTATTTCTTTGGTAGAAAGTAATTCCAATAATAACACAGATATTTTGATCACATGTAAGCAAAAACCTGCgtaaggaaagaaagaaaatgatgcCAGAACCCCGATATGTTTTGataaaatgcatgttttgtgAAGGAGGGCTATTAACACCAACATCTGTTATTAATGGGACCCTTATTTATCATTAAGGTGACCCGTCAAAGTTAGTTTTCAGTGAACTAAAATGATTGACTAACTAAATGAATTGCTCACACGACAATATGCAACAAcagacacaacatacacattgcGTTAATAGTAAGCAAACACGGGAGTAAGTATGATAAACTATAATTCAAAATGATCAGATTAATTGAGGTAAGTACTAAAGACTAACTACACATCACATTGAAATAGAATAGAAGGCAGCTCAATAACTACTGGGACATTCCTTACATTGTTAACAGTAATGATTGTCCATTACAGGTCTGGCTTTAGTATTTACATCTCTATCTATTTGGTTAAAGGAAGATTGTGCAAAGCAGATAAATAGTCCAGGTTTAACAGCTCAGAGAGGTGACTATCAAAGAGGGCTGAAGCGTTAAAAGCATTCCATCAcaagaacaaataaaagaagaaaaaaaaaatacaaaaagtgtCTGGGTGGGTTAAAATGGGAgtaggtttgtttgtgtgcaaatTTGTGCTAGGTGCTCGGTGTTGACGGATCAGGCTTGCAGCATTGGCGACTCAGATTGAAACTTTCAGACAGGAGGACAAGGGCTGGCTGCTggatagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggatgaggaCATCAACTTATGAACTTGCTGTCTGCTTCAGTGTGATAGTGAGGCAGAGCAACTAGAGGGACTACAGATGTGCATGATTTATTctcattttgattggtttatgcCACAGTGGGCTTTTATATATGTAAGGCTGAATTATATTGTACCTATTTTTCTTAATATTGGACAAATATACTTGATTTGCAAATAATAGGTgatgagagagaaacagacaagcAGAGGGAGGACATTTCATTGGGCACAGTGGAAATAACCAATAGTGGAAATTCGGTCCAAGAAGaaccacagacaaaaacaaaccacaaaATAGACACAGTGAATTTCAAATGGGACTGTGTGTATGTCCCAAAAACAGTTGTGTGTCAGAGACACCCAGTTTGCCCAGCGGAGTGAATCACAGTGTGCAGACACATTATGTGGAGGAACAGCGTGTGCTGAAGTCAGGACAGCGTAGCGTgggtgggtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacatatgaTGTTTGTGTGCGGGTTCTGTCATGAGTGAAAGTAATGTGGTATCTTGTCCACGACCTCAGACTTTCTCCTTCATACTGGATCAAAGGGGCCATGAATAGGATCCATAGTGTCCTGTTGTTGATCCttaatttatgtaatttttttattgtgatgttttactctgatgtgttttatttattcaacTTCACTTATAGGGACCATCAACCTGTCAGGGACAAGGTTGGAAATTATTCTTTGGctataatactgtatatttacattcttcaatgttcattaatatacactgtccctttttgaaataaatgaacttaacttaaatagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTGTTTAACcttgaaaagaccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294214 lncRNA upstream 19407 1653177 ~ 1731066 (+) True G217378
TU294213 lncRNA upstream 33702 1653177 ~ 1716771 (+) False G217378
TU294175 lncRNA upstream 228936 1517494 ~ 1521537 (+) True G217352
TU294167 lncRNA upstream 245290 1502229 ~ 1505183 (+) False zcchc2
TU294145 lncRNA upstream 396889 1352160 ~ 1353584 (+) True G217326
TU294252 lncRNA downstream 233235 2068303 ~ 2069213 (+) True LOC120552171
XR_005637967.1 lncRNA downstream 233241 2068309 ~ 2069213 (+) False LOC120552171
TU294298 lncRNA downstream 372183 2207251 ~ 2207564 (+) True G217444
TU294311 lncRNA downstream 427479 2262547 ~ 2438589 (+) True G217449
TU294324 lncRNA downstream 470475 2305543 ~ 2312621 (+) True G217459
XM_039789603.1 mRNA upstream 221164 1523394 ~ 1529309 (+) True LOC120551998
XM_039789604.1 mRNA upstream 221164 1523394 ~ 1529309 (+) False LOC120551998
XM_039789600.1 mRNA upstream 245258 1462750 ~ 1505215 (+) True zcchc2
XM_039789614.1 mRNA downstream 423852 2258920 ~ 2313426 (+) True LOC120552004
XM_039789617.1 mRNA downstream 591092 2426160 ~ 2438599 (+) False aoc1
XM_039789618.1 mRNA downstream 591126 2426194 ~ 2438599 (+) True aoc1
XM_039789655.1 mRNA downstream 623591 2458659 ~ 2558626 (+) False slc12a7b
XM_039789657.1 mRNA downstream 623591 2458659 ~ 2558626 (+) False slc12a7b
TU294210 other upstream 75073 1669162 ~ 1675400 (+) False G217377
TU294211 other upstream 75073 1671847 ~ 1675400 (+) True G217377
unassigned_transcript_1282 other upstream 98825 1651577 ~ 1651648 (+) True trnan-guu_46
unassigned_transcript_1281 other upstream 99333 1651067 ~ 1651140 (+) True trnan-guu_45
unassigned_transcript_1280 other upstream 100802 1649598 ~ 1649671 (+) True trnan-guu_44
TU294514 other downstream 1171215 3006283 ~ 3021642 (+) True G217606
unassigned_transcript_1283 other downstream 1332675 3167743 ~ 3167824 (+) True trnas-aga_12
unassigned_transcript_1284 other downstream 1333719 3168787 ~ 3168858 (+) True trnag-ucc_35
unassigned_transcript_1285 other downstream 1334017 3169085 ~ 3169166 (+) True trnas-aga_13
unassigned_transcript_1286 other downstream 1346230 3181298 ~ 3181369 (+) True trnag-ucc_36

Expression Profile