RNA id: XR_005637951.1


Basic Information

Item Value
RNA id XR_005637951.1
length 1051
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC120552006
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 2351351 ~ 2355356 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGTTGAATGCAATGCAAATCCTGCAAATTCACCAACCTCAATGAAGCTGTTCTCCTGAAGCACTAGGCCTACTGTCTGTATCACAGAGGCAGGCAGAGTTCTATCGGATCACCAACAAGAACCTACTAGACAACTTTAGAGCAGCCATTAATCAGCACACTCTAGGACTGCTTGGACTCTATCGGGCTAGGAGGCCAGCTTTTCCGTCTGAGATGGATCAACTCCTTAAGGGACTGGATGAAGAGACCAATGACATCACAGCACACACAGGCTGCAGCCTTGAAGGGCCTTCCTTTGTATATCTGTGAAAGTCATGAGAAGCTGTTCAGGAGTTGTCTGGATACTGACCCATAAGAGGAGCAGACAAAGCCTCATTGTGGGGATACTTACTATGGAGGATGATCAAAGTACGGCTCCGGCAAGTTGCAAATGTAGCTGTGGTTCTAGAAGAAGACATCGTCTTACAAGACCTCCCTGACCTGCTAACGGCCTTTGCTTTGCTCTTTGGGCTGATATGCCTCAAACATTCAGTTTCCCAAGGAACTGAGGTACGCCTTCGAAACATTTCAGAAGGTGTTAAGTAATCAAATCTTGCTGTCCTTTCTAagtatttaagtaaaaaaattaGAATATGTTAACTGACATCCACAACTACTAATGttcagtagggctgcacgattcagaaaatgtcacgattcaatatcaattttcgtagggctgtgttcgattgaagaaattcttagtcgactaacattcaactcattcaactgtatcgactaatcgattagttgatttaatcgacgatctgtaaatctgagtttctcccaaaagagtcatgcaaaaggatgcatatattgaataagataatGCCTCCTTTGCATATATTAAACaccaacatttcagaaaacgtgtaatacaacaaataactgcCTTAATGAAAGTTATTAAAGTAGATTTCACGGTGATATCTATTAGgtaaaatgtcaacccttaattcttgtgtttaccagagatgtgctcgtacgtttcttggaaataagtcattcagca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294324 lncRNA upstream 40238 2305543 ~ 2312621 (+) True G217459
TU294325 lncRNA upstream 40361 2305543 ~ 2312498 (+) False G217459
TU294298 lncRNA upstream 145295 2207251 ~ 2207564 (+) True G217444
TU294252 lncRNA upstream 283646 2068303 ~ 2069213 (+) True LOC120552171
XR_005637967.1 lncRNA upstream 283646 2068309 ~ 2069213 (+) False LOC120552171
XR_005637954.1 lncRNA downstream 54529 2409885 ~ 2416466 (+) True LOC120552009
TU294312 lncRNA downstream 76401 2431757 ~ 2437880 (+) False G217449
TU294360 lncRNA downstream 208307 2563663 ~ 2563878 (+) True G217489
TU294353 lncRNA downstream 316582 2671938 ~ 2673750 (+) True G217482
TU294510 lncRNA downstream 646494 3001850 ~ 3003104 (+) True G217604
XM_039789614.1 mRNA upstream 39433 2258920 ~ 2313426 (+) True LOC120552004
XM_039789603.1 mRNA upstream 823550 1523394 ~ 1529309 (+) True LOC120551998
XM_039789604.1 mRNA upstream 823550 1523394 ~ 1529309 (+) False LOC120551998
XM_039789602.1 mRNA upstream 847644 1462750 ~ 1505215 (+) False zcchc2
XM_039789617.1 mRNA downstream 70804 2426160 ~ 2438599 (+) False aoc1
XM_039789618.1 mRNA downstream 70838 2426194 ~ 2438599 (+) True aoc1
XM_039789655.1 mRNA downstream 103303 2458659 ~ 2558626 (+) False slc12a7b
XM_039789657.1 mRNA downstream 103303 2458659 ~ 2558626 (+) False slc12a7b
XM_039789659.1 mRNA downstream 103303 2458659 ~ 2558626 (+) False slc12a7b
TU294210 other upstream 677459 1669162 ~ 1675400 (+) False G217377
TU294211 other upstream 677459 1671847 ~ 1675400 (+) True G217377
unassigned_transcript_1282 other upstream 701211 1651577 ~ 1651648 (+) True trnan-guu_46
unassigned_transcript_1281 other upstream 701719 1651067 ~ 1651140 (+) True trnan-guu_45
unassigned_transcript_1280 other upstream 703188 1649598 ~ 1649671 (+) True trnan-guu_44
TU294514 other downstream 650927 3006283 ~ 3021642 (+) True G217606
unassigned_transcript_1283 other downstream 812387 3167743 ~ 3167824 (+) True trnas-aga_12
unassigned_transcript_1284 other downstream 813431 3168787 ~ 3168858 (+) True trnag-ucc_35
unassigned_transcript_1285 other downstream 813729 3169085 ~ 3169166 (+) True trnas-aga_13
unassigned_transcript_1286 other downstream 825942 3181298 ~ 3181369 (+) True trnag-ucc_36

Expression Profile