RNA id: TU294353


Basic Information

Item Value
RNA id TU294353
length 640
lncRNA type sense_over
GC content 0.49
exon number 2
gene id G217482
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 2671938 ~ 2673750 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccctctcattccccctgctccggcgtttccccctctcattccccctgctctggtgtctccccctctcattcccccctgctctggcgtttccgagcccctaaaccggagacatttgaaaactcttctgacccgttttggttctgaatctgcggggttgtgttgcagtctcgaTGGCCGCCagcggagacctttggcaacgccGACACTGACGCCGAcgtttctcctcctgattgggACGTCTCATTCTCTGAGActaaagctactaacgttaccatggcaactaccagcagcaGGCGGAGCATACCTCCTGTTTAAGCCCAGTATATGataatgttgatgagatatgttAGTTTAAGctgagattagttcttctactggagctgaAAAGACGTGTGTGCCCagagatcgcttttggctcaaaactctgcttgaaaaccaaaacgtagcgatgtaaatgGAGCCTGAGAGACACAATATTTATCTGAACAGTTCAGTTCCGTACACCTGTAGATCAAGTGTATGCATGCAATGCCTTATTTTCTGTCTGACTGGCTCTCCATCACTCTTCTTATTAACGCTCTCTAAAAGCCATTACCTCCTCAGCTCCCAGAGATGATATGACTCTCAGCTCTCAGCTCAG

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294360 lncRNA upstream 108060 2563663 ~ 2563878 (+) True G217489
TU294311 lncRNA upstream 233349 2262547 ~ 2438589 (+) True G217449
TU294312 lncRNA upstream 234058 2431757 ~ 2437880 (+) False G217449
XR_005637954.1 lncRNA upstream 255472 2409885 ~ 2416466 (+) True LOC120552009
XR_005637951.1 lncRNA upstream 316582 2352859 ~ 2355356 (+) True LOC120552006
TU294510 lncRNA downstream 328100 3001850 ~ 3003104 (+) True G217604
TU294518 lncRNA downstream 335439 3009189 ~ 3011361 (+) True G217608
TU294519 lncRNA downstream 335439 3009189 ~ 3011592 (+) False G217608
TU294520 lncRNA downstream 335439 3009189 ~ 3011592 (+) False G217608
TU294530 lncRNA downstream 354920 3028670 ~ 3029018 (+) True G217615
XM_039790086.1 mRNA upstream 56037 2567665 ~ 2615901 (+) True gfod1
XM_039789657.1 mRNA upstream 113312 2458659 ~ 2558626 (+) False slc12a7b
XM_039790616.1 mRNA downstream 5886 2679636 ~ 2772686 (+) True arhgap12b
XM_039790617.1 mRNA downstream 5886 2679636 ~ 2772686 (+) False arhgap12b
XM_039790619.1 mRNA downstream 5886 2679636 ~ 2772686 (+) False arhgap12b
XM_039790618.1 mRNA downstream 5887 2679637 ~ 2772686 (+) False arhgap12b
XM_039790620.1 mRNA downstream 5887 2679637 ~ 2772686 (+) False arhgap12b
TU294210 other upstream 996538 1669162 ~ 1675400 (+) False G217377
TU294211 other upstream 996538 1671847 ~ 1675400 (+) True G217377
unassigned_transcript_1282 other upstream 1020290 1651577 ~ 1651648 (+) True trnan-guu_46
unassigned_transcript_1281 other upstream 1020798 1651067 ~ 1651140 (+) True trnan-guu_45
unassigned_transcript_1280 other upstream 1022267 1649598 ~ 1649671 (+) True trnan-guu_44
TU294514 other downstream 332533 3006283 ~ 3021642 (+) True G217606
unassigned_transcript_1283 other downstream 493993 3167743 ~ 3167824 (+) True trnas-aga_12
unassigned_transcript_1284 other downstream 495037 3168787 ~ 3168858 (+) True trnag-ucc_35
unassigned_transcript_1285 other downstream 495335 3169085 ~ 3169166 (+) True trnas-aga_13
unassigned_transcript_1286 other downstream 507548 3181298 ~ 3181369 (+) True trnag-ucc_36

Expression Profile