RNA id: TU294360


Basic Information

Item Value
RNA id TU294360
length 216
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G217489
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 2563663 ~ 2563878 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctgctacattcatctgttccagctttagttactagttactttagttactccactacattcatctgttccagctttagttactagttactttagttactccgctacattcatctgttccagctttagttactagttactttagttactccactacattcatctgttacagctttagttactagttactttacacattaagattactGCACACAGAAc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294311 lncRNA upstream 125074 2262547 ~ 2438589 (+) True G217449
TU294312 lncRNA upstream 125783 2431757 ~ 2437880 (+) False G217449
XR_005637954.1 lncRNA upstream 147197 2409885 ~ 2416466 (+) True LOC120552009
XR_005637951.1 lncRNA upstream 208307 2352859 ~ 2355356 (+) True LOC120552006
TU294335 lncRNA upstream 208568 2351351 ~ 2355095 (+) False LOC120552006
TU294353 lncRNA downstream 108060 2671938 ~ 2673750 (+) True G217482
TU294510 lncRNA downstream 437972 3001850 ~ 3003104 (+) True G217604
TU294518 lncRNA downstream 445311 3009189 ~ 3011361 (+) True G217608
TU294519 lncRNA downstream 445311 3009189 ~ 3011592 (+) False G217608
TU294520 lncRNA downstream 445311 3009189 ~ 3011592 (+) False G217608
XM_039789655.1 mRNA upstream 5037 2458659 ~ 2558626 (+) False slc12a7b
XM_039789657.1 mRNA upstream 5037 2458659 ~ 2558626 (+) False slc12a7b
XM_039789659.1 mRNA upstream 5037 2458659 ~ 2558626 (+) False slc12a7b
XM_039789660.1 mRNA upstream 5037 2458659 ~ 2558626 (+) False slc12a7b
XM_039789658.1 mRNA upstream 5037 2480766 ~ 2558626 (+) True slc12a7b
XM_039790086.1 mRNA downstream 3787 2567665 ~ 2615901 (+) True gfod1
XM_039790939.1 mRNA downstream 60808 2624686 ~ 2672738 (+) True LOC120552716
XM_039790940.1 mRNA downstream 61202 2625080 ~ 2672738 (+) False LOC120552716
XM_039790616.1 mRNA downstream 115758 2679636 ~ 2772686 (+) True arhgap12b
XM_039790617.1 mRNA downstream 115758 2679636 ~ 2772686 (+) False arhgap12b
TU294210 other upstream 888263 1669162 ~ 1675400 (+) False G217377
TU294211 other upstream 888263 1671847 ~ 1675400 (+) True G217377
unassigned_transcript_1282 other upstream 912015 1651577 ~ 1651648 (+) True trnan-guu_46
unassigned_transcript_1281 other upstream 912523 1651067 ~ 1651140 (+) True trnan-guu_45
unassigned_transcript_1280 other upstream 913992 1649598 ~ 1649671 (+) True trnan-guu_44
TU294514 other downstream 442405 3006283 ~ 3021642 (+) True G217606
unassigned_transcript_1283 other downstream 603865 3167743 ~ 3167824 (+) True trnas-aga_12
unassigned_transcript_1284 other downstream 604909 3168787 ~ 3168858 (+) True trnag-ucc_35
unassigned_transcript_1285 other downstream 605207 3169085 ~ 3169166 (+) True trnas-aga_13
unassigned_transcript_1286 other downstream 617420 3181298 ~ 3181369 (+) True trnag-ucc_36

Expression Profile