RNA id: TU294518


Basic Information

Item Value
RNA id TU294518
length 616
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G217608
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 3009189 ~ 3011592 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agaggacagaaagagggaagaagaaagaggacagaaagaggaaagaggaaagaaagaagaaagaggacagagggaagaataaagagagaagaaagaggacagaaagaggaaagagaacagggagcgagaggacagaaagaagaaagaggacagaaagagggaagaagaaagaggacagaaagaggaaagaggacagggagcgagaggacagaaatagggaagaagaaagaggacagaaagaggaaagaggacaaggagcgaaagaggacagaaagaggaaagaaagaagaaagaggacagagggaagaataaagagggaagaaagaggacagaaagaggaaagaaagaagaaagaggacagagggaagaataaagagggaagaaagaggacagaaagaggaaagagaacagggagcgagaggacagaaagaagaaagaggacagaaagagggaagaagaaagaggaaagaaagaggaaagaggacagggagcgagaggacagaaagagggaagaagaaagaggacagaaagaggaaagaagacaaggagcgagaggacagaaagaggaaagaaagaagaaagaggacagagggaagaataaagagggaagaaagag

Function

GO: NA

KEGG:

id description
ko04724 Glutamatergic synapse
ko05031 Amphetamine addiction
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294510 lncRNA upstream 6085 3001850 ~ 3003104 (+) True G217604
TU294353 lncRNA upstream 335439 2671938 ~ 2673750 (+) True G217482
TU294360 lncRNA upstream 445311 2563663 ~ 2563878 (+) True G217489
TU294312 lncRNA upstream 571309 2431757 ~ 2437880 (+) False G217449
XR_005637954.1 lncRNA upstream 592723 2409885 ~ 2416466 (+) True LOC120552009
TU294530 lncRNA downstream 17309 3028670 ~ 3029018 (+) True G217615
TU294533 lncRNA downstream 34031 3045392 ~ 3047425 (+) True G217618
XR_005637993.1 lncRNA downstream 143824 3155185 ~ 3163076 (+) True LOC120552406
TU294680 lncRNA downstream 449410 3460771 ~ 3461648 (+) False G217716
TU294683 lncRNA downstream 449410 3460771 ~ 3461648 (+) True G217716
XM_039790273.1 mRNA upstream 73620 2878512 ~ 2935569 (+) True znf438
XM_039790618.1 mRNA upstream 236503 2679637 ~ 2772686 (+) False arhgap12b
XM_039790417.1 mRNA downstream 209254 3220615 ~ 3233822 (+) True LOC120552392
XM_039790124.1 mRNA downstream 271234 3282595 ~ 3306837 (+) False jcada
XM_039790125.1 mRNA downstream 271379 3282740 ~ 3306837 (+) True jcada
XM_039789899.1 mRNA downstream 390607 3401968 ~ 3433621 (+) True abcd3a
XM_039789898.1 mRNA downstream 390607 3401968 ~ 3433621 (+) False abcd3a
TU294210 other upstream 1333789 1669162 ~ 1675400 (+) False G217377
TU294211 other upstream 1333789 1671847 ~ 1675400 (+) True G217377
unassigned_transcript_1282 other upstream 1357541 1651577 ~ 1651648 (+) True trnan-guu_46
unassigned_transcript_1281 other upstream 1358049 1651067 ~ 1651140 (+) True trnan-guu_45
unassigned_transcript_1280 other upstream 1359518 1649598 ~ 1649671 (+) True trnan-guu_44
unassigned_transcript_1283 other downstream 156382 3167743 ~ 3167824 (+) True trnas-aga_12
unassigned_transcript_1284 other downstream 157426 3168787 ~ 3168858 (+) True trnag-ucc_35
unassigned_transcript_1285 other downstream 157724 3169085 ~ 3169166 (+) True trnas-aga_13
unassigned_transcript_1286 other downstream 169937 3181298 ~ 3181369 (+) True trnag-ucc_36
unassigned_transcript_1287 other downstream 170243 3181604 ~ 3181685 (+) True trnas-aga_14

Expression Profile