RNA id: TU294857


Basic Information

Item Value
RNA id TU294857
length 4827
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id G217837
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 3936010 ~ 3941329 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cggCCCCAAGATTTGGCAAAGACCACGTGGCAGCTCAGTCTGGAGAGTGGCGCTCCGAGGACAGCAGCTCCAACCTCATCATCCTCGAAACATCCAATCTGATTATTCGCAGTGCCTCTGAGTTCTCTCTCAACAAAGCCTGTGAGCAGCCCCAGGAGAAAATGTTCCTGAACAACCCCTTTTTCAAGCTGCGTTCAAGAAGCACAATGTCACTGGTGGATGAAGAGATTAAGATGGTGAAGCAGAGGGAGGACGATTTGAAGAAAGAGAGGGCAAATCTATATGGCGAAGACAGGTTCAATAATGAAAGGATATTGTCAAATAACAAGGACACTTTGGCATTTGACAATTCAGTGGATGTACCATTGAAGTGCAAGTCCTCTCcctcatcaccaatgaaaacaGCCTACAGGATGGATCGCTCTGCCTTATCCTGTGATCACAGATTTCCAGAGGTCTACGCAGGAGGAAGACGCAAGAGTTCCATGGCTCTGCGCTGGGAGGCGGGCGAGTTTACAAAAACCGAGTAAAGAGGACCCGGTCAACAGTTATGCTATATAAGGGCATCGATTGTCAATGTTATACTCATTCAAGTTAAATGCAGTGTTGCAGTGTTTTGTTTCATCTTGTGACATAACctaaactctctgcttctgtaaTGCTTTGGACAAAACTAGCAAGACAATGAGAATGTTTATGGCCACATTACTTTGGACTAGGTGCATAGAGTTGTATACTGTACCATGGACAAATCAATTCCAGATGGCCAGAGGGTGTGCATTATTTTCAGATACCCACACGGCTCTGACGTGGCCTCATCACTTTTGAATCAACACTCATAGCTGGAAGGCTGCTGCATGGTTTCAGCTCATACTAGGCTTCAGCTTCTACTACTTGTTGGATTAGTAAAATAACGTTTATTACAATATTGACAAGGACAGTGCCAACACACAGTTTCCATTTAAAGCAAATACAAATAATTTGAACCGTGGTGATGGTATACATGAGAGGCAAATCCAGGTTATCAGCCTATGTGTCATGCAATCATTTTCAATAACTGCATGCCCCCTTGTGGATTATCACTTGCCTATTCAAGAACTGTTTAAAAGGTCTAATCCAGAAAAAAACTGCCATTggaaaaaatcatatttttaaatatttggccTTATTTATGAAGATAGTAGGATATGACTAAACAGTACTCACATGCcatatgtagcctacattaagAGTTAGTGGTCACTTATGAGGCTTCAGCAGTATGAGTTAGACAAATCAAGTGACCATTGAGTGTAGGTTTATTGCTAATATAATACTGCctgttgtgttttatattgGTCTTGTGTTGAAGtatgtttttccttttatttgaattgtgttttctgTAGCGCTGCTCTTGAAGGTTGGACTAAGGGCTTAATTTCAGTTATCGCTAGGGTATGGTTTGATGCCACAAAGATGACTTGTTGAAGTGAGGGTAGTGATCTGGAGCCTTCTAGTGGGAAAATGGGTATCAAAAGAACAGGCcgtaaaagttaaaacaatgaCCCAAAAGATGCTAAAATGGGGGAGATCTGCAGATTTGGTGATAATTCTGCGTGGATTTAGTCATTGGACCCAGCATTGAGGTTAGTGGAACCACAAATTGATGGGAAAAGACTTTGACACCAACAGCAAATTTGCCTGTATCTACGGACTTCAGAAGTatttctctgctgcagctcagCGAGGAACCACAGACCAGAGGAGACAAACCTCATTCCAGCTTTAGCTGAACATTAGAATCCATTTTTAAACAGGACTGTGACTTTTGAATCCCATCCTTTTCAGTGTAGTTGCACAGGCTGTTAtcatgaaccatttgtacaCATAGCaatgaaaagtaatgcactgtaattcgtatgtattTCACGTATTTATTACTATAAGCTCCACAATGACTGCCACTGTATAGCAGTTCCGAGATCTGCATAGGAAGTAGGTCAGGGTGGATGCGTGGGTCCTAAAAtacagggctttcaagcaggGGAGGGGAGTTTATGttctggaagaagttaaggggaaaacataacactttcacccaggaaatggaTGTTTGTGTCCTGGGACTActacttaaagatgcagtaggtaagacttataaaactaactttctgtcatatttgttgaaactgaccctatgttctagtagaactacatgaagcaggtcatttaaaaaaaatccagatcctcttctcccttgtggggggaggggcttaggagaccgttttgggctttagcggaaagtgGGGAGGGTCTGAGGAGTTGtccatgttcacattttttggctaagtcctggatcttcacaatcctatctacggcacctttaagtgGACCAGTGTTTTAacacaaaccacaatcttttttctaatcttgaCTGGACGTTTTGGTCGTCACAGCATGACGGTCACCTTTAGTCGGGTAAACTTACCTGCAACGgccgctaaacttaactgtcatgccgtaatttcgtaggatatcatatgaATTGTTTTGCATAAGTTATcatacaatatcatacaaacacTTTAATTAGAATGCGTTGAGTCACACTATGAAGAGACTGCTTCCAAGGCCAGCATGTATAAGAGGATTGATTACAGTGACCAACAAGTCTCTCAACATACATATGACATGTGACTAttgcattaaaggtcccatggcatgaaaatttcactttatgaggttttttaacattaatatgagttcccccagcccgcctatggtcccccagtggctagaaatggcgataggtgtaaaccgaggcctgggtatcctgctctgcctttgagaaaatgaaagctcagatgggccaatgaggaatcttctccttatgaggtcataaggagcaaggttacctcccctttctctgctttgcccgcccagagaatttggctgacccatgagagagagacatcatggctttcaaacgagaaaagtggcagttggtcaaggccacacccccaccctccaccttgcccccctctcatcttcaatagcatttaaagatacagacacagaaatggcacatcctaaggaaagctcattgtggtactggctctagtggctgtaattctgcaccaaggctgaatttcgggaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacatcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactaaggcctatataaaagagacttcagatacagtattaggggaccactaaggtctatacaaaagagacttcagatacagtattaggggaccactaaggcctatataaaacagacttcagatacagtattaggggaccactaaggcctatatgaaagcatccaaaaagcagcatgtcatgggaccttcaaGATAGGCTTCATAAAGTGTGAACCTTTCCTTTATATGAAAGATGATAATATgctgacagtaaactgaaagtAGTGTTTTTGCTAAGATGCCTGAATGTTAGACAAATGTGTCGTTTTGTCCACTCTTTGCTAAACTTTTCTTGACATTGTAAATGTAAACCAGATTTGAAAACATATTTTGATGTTATTGTATGTCTTGATAAAGCAAACGCTACATTGCTCAGTGTATATGAATTGTATTTTCGtacaatgctttttttttttgctgcaaagTAATATGTCAAGGTGAGCTGGACGGACATAGATCAGCACAATTTACAAAATAAGAGAAGATTttagtgaaaataaatataaatgtataaattaatgtaaaaataaatgcatttctttttttcagttttctcgATCCCTGGTTGATACTTCAGGACACAGAACTATTTGAGTTTAGCCTGAACTAGCGCCACATTATTCTGTATAACCTGCAGTAGGACAATCCAATGACTACGGGGATTAGTGAACAGTGCTGTCACAATGCTAAAAAATAGAGGACCAATGACACTTGAAAGTGGACGTCCGTTGTCTGAAATCTCAGTGCTTTGGAAATTCCAAATAATAAATAGGTTTCCACAAATGAAAGTATTTTATTCTTTATACAATAGAGCTATAAATGAATGATCACTTATATACAGCAGAGTGAAGCTACAGTATacttacataaacttctggttaATGTTCAATCAAATTCAGATTTTATTTTCCAATATTCAAGCCGTAACAGGGCAATCGTAGGCAGTATTCATTTGTTTAGCACTTTTCTTTGTGGCTCACTTTATAGTGAATTTCATgaccacatacagtatattttcaaAAGGGATTTTTTCCGAAATATAAATACAGGTATTTGATGATTTTATTAGATATCTTTATCATTATTTACAAAGCCTTGTTATTACCTGCTTCTCTGAAAAGCATCTTCTAAGAGCTTATTATGTTCTTGACTCAGCTGACCTAAAACAGcattgtttctgtttgtttgtatgcTTCTTTGTTAAATTATAGCTTACAAATCTCAAGGTTGCTTGCTGATGTTTAAAcattctgtgaaaaaaaaatccctgacaTGGCTTTTTGGGGGCTTATTCAGGCTCTTTATGACTAAATATGCAGGGACTTTATACTTTGTATTCCTTGTGCAAGTATTAAAGAGATGAGtgcaacaataaaaaatatatatgaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294845 lncRNA downstream 31458 3904107 ~ 3904552 (-) True G217828
TU294831 lncRNA downstream 62376 3871733 ~ 3873634 (-) True G217818
TU294826 lncRNA downstream 91528 3844143 ~ 3844482 (-) True G217817
TU294828 lncRNA downstream 91528 3844143 ~ 3844482 (-) False G217817
TU294829 lncRNA downstream 91528 3844143 ~ 3844482 (-) False G217817
TU294928 lncRNA upstream 237367 4178696 ~ 4178918 (-) True G217884
TU294950 lncRNA upstream 321297 4262626 ~ 4262932 (-) True G217905
TU294982 lncRNA upstream 524654 4465983 ~ 4466440 (-) True G217935
TU295011 lncRNA upstream 624301 4565630 ~ 4566156 (-) True G217960
TU295023 lncRNA upstream 677287 4618616 ~ 4618865 (-) True G217971
XM_039790688.1 mRNA downstream 34987 3888618 ~ 3901023 (-) True LOC120552547
XM_039789980.1 mRNA downstream 243402 3669151 ~ 3692608 (-) True plag1
XM_039789979.1 mRNA downstream 291460 3642390 ~ 3644550 (-) True mos
XM_039790530.1 mRNA downstream 365632 3555067 ~ 3570378 (-) True alg14
XM_039790264.1 mRNA downstream 392217 3510772 ~ 3543793 (-) True cnn3a
XM_039789737.1 mRNA upstream 66570 4007899 ~ 4050666 (-) True LOC120552072
XM_039789731.1 mRNA upstream 125465 4066794 ~ 4160555 (-) True cubn
XM_039789745.1 mRNA upstream 224748 4166077 ~ 4176543 (-) True LOC120552076
XM_039789746.1 mRNA upstream 224748 4166077 ~ 4176530 (-) False LOC120552076
XM_039789747.1 mRNA upstream 252516 4193845 ~ 4197469 (-) True neurod6a
TU294772 other downstream 231653 3692952 ~ 3704357 (-) True G217780
unassigned_transcript_1351 other downstream 313389 3622524 ~ 3622621 (-) True trnar-ucu_66
unassigned_transcript_1350 other downstream 314403 3621510 ~ 3621607 (-) True trnar-ucu_65
unassigned_transcript_1349 other downstream 314775 3621138 ~ 3621235 (-) True trnar-ucu_64
unassigned_transcript_1348 other downstream 315076 3620837 ~ 3620934 (-) True trnar-ucu_63
unassigned_transcript_1354 other upstream 452960 4394289 ~ 4394370 (-) True trnas-gcu_21
unassigned_transcript_1355 other upstream 463142 4404471 ~ 4404552 (-) True trnas-gcu_22
unassigned_transcript_1356 other upstream 464813 4406142 ~ 4406223 (-) True trnas-gcu_23
unassigned_transcript_1361 other upstream 480744 4422073 ~ 4422154 (-) True trnas-gcu_28
unassigned_transcript_1362 other upstream 483290 4424619 ~ 4424700 (-) True trnas-gcu_29

Expression Profile