RNA id: TU295021


Basic Information

Item Value
RNA id TU295021
length 210
lncRNA type intronic
GC content 0.37
exon number 1
gene id G217969
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 4655265 ~ 4655474 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

accactaaggtctatataaaagagacttcagatacagtattaggggaccactaagatctatataaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagactacagatacagtattaggggaccactaaggcctatataaaagagacttcagatacagtattaggggaccactaaggtctatataaaagcatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295007 lncRNA upstream 131369 4523594 ~ 4523896 (+) True G217956
TU294993 lncRNA upstream 132559 4522385 ~ 4522706 (+) False trdmt1
TU294974 lncRNA upstream 218530 4436423 ~ 4436735 (+) True G217927
TU294972 lncRNA upstream 251896 4403049 ~ 4403369 (+) True G217925
TU294946 lncRNA upstream 393667 4256076 ~ 4261598 (+) False ppp1r17
TU295015 lncRNA downstream 104146 4759620 ~ 4762250 (+) True G217964
TU295016 lncRNA downstream 104146 4759620 ~ 4761661 (+) False G217964
TU295068 lncRNA downstream 300599 4956073 ~ 4956401 (+) True G218012
TU295081 lncRNA downstream 547113 5202587 ~ 5202896 (+) True G218023
TU295083 lncRNA downstream 578316 5233790 ~ 5234090 (+) True G218025
XM_039789738.1 mRNA upstream 132816 4511713 ~ 4522449 (+) True trdmt1
XM_039789752.1 mRNA upstream 332141 4313351 ~ 4323124 (+) True LOC120552080
XM_039789754.1 mRNA upstream 393691 4256048 ~ 4261574 (+) True ppp1r17
XM_039789732.1 mRNA upstream 404959 4221909 ~ 4250306 (+) True LOC120552069
XM_039790687.1 mRNA upstream 720139 3900951 ~ 3935126 (+) True LOC120552545
XM_039789742.1 mRNA downstream 10101 4665575 ~ 4756817 (+) False plppr5b
XM_039789543.1 mRNA downstream 225814 4881288 ~ 4888711 (+) True LOC120551947
XM_039790919.1 mRNA downstream 880173 5535647 ~ 5555611 (+) True LOC120552695
XM_039790206.1 mRNA downstream 1095407 5750881 ~ 5817627 (+) True reck
XM_039790046.1 mRNA downstream 1199166 5854640 ~ 5895766 (+) True tgfbr1b
unassigned_transcript_1360 other upstream 236092 4419092 ~ 4419173 (+) True trnas-gcu_27
unassigned_transcript_1359 other upstream 240262 4414922 ~ 4415003 (+) True trnas-gcu_26
unassigned_transcript_1358 other upstream 242634 4412550 ~ 4412631 (+) True trnas-gcu_25
unassigned_transcript_1357 other upstream 244303 4410880 ~ 4410962 (+) True trnas-gcu_24
unassigned_transcript_1353 other upstream 261689 4393504 ~ 4393576 (+) True trnaa-cgc_15
unassigned_transcript_1366 other downstream 143701 4799175 ~ 4799247 (+) True trnaa-agc_24
unassigned_transcript_1369 other downstream 149757 4805231 ~ 4805303 (+) True trnaa-agc_25
unassigned_transcript_1371 other downstream 151166 4806640 ~ 4806712 (+) True trnaa-agc_26
unassigned_transcript_1372 other downstream 154450 4809924 ~ 4810007 (+) True trnas-gcu_36
unassigned_transcript_1373 other downstream 157077 4812551 ~ 4812632 (+) True trnas-gcu_37

Expression Profile