RNA id: TU295081


Basic Information

Item Value
RNA id TU295081
length 310
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G218023
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 5202587 ~ 5202896 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

catagcttggacttatgttttgggtcattatcttgctgtaggatgaacccctgatcaactaggcgcataccagagggtactgcatggcgctgcaaaatgctgtggtagccgttttggttcagggtgcctttcactctgtacaaatcaccgaccctggatccagcaaaacagccccagaccatcacgcttcctcctccatgtttgacagttgatgtcacacactgaggaaccatcctttcgcctactcgatggcgtacaaaaatcctgcgtgatgaaccgaagatttcaaattttgattcatcagtccata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295068 lncRNA upstream 246186 4956073 ~ 4956401 (+) True G218012
TU295015 lncRNA upstream 440337 4759620 ~ 4762250 (+) True G217964
TU295016 lncRNA upstream 440926 4759620 ~ 4761661 (+) False G217964
TU295021 lncRNA upstream 547113 4655265 ~ 4655474 (+) True G217969
TU295007 lncRNA upstream 678691 4523594 ~ 4523896 (+) True G217956
TU295083 lncRNA downstream 30894 5233790 ~ 5234090 (+) True G218025
TU295084 lncRNA downstream 44399 5247295 ~ 5247686 (+) True G218026
TU295089 lncRNA downstream 219078 5421974 ~ 5422348 (+) True G218031
TU295097 lncRNA downstream 288247 5491143 ~ 5491368 (+) True G218039
TU295129 lncRNA downstream 426815 5629711 ~ 5630218 (+) True G218060
XM_039789543.1 mRNA upstream 313876 4881288 ~ 4888711 (+) True LOC120551947
XM_039789744.1 mRNA upstream 445770 4618641 ~ 4756817 (+) False plppr5b
XM_039789740.1 mRNA upstream 445770 4618646 ~ 4756817 (+) True plppr5b
XM_039789742.1 mRNA upstream 445770 4665575 ~ 4756817 (+) False plppr5b
XM_039789743.1 mRNA upstream 459623 4618639 ~ 4742964 (+) False plppr5b
XM_039790919.1 mRNA downstream 332751 5535647 ~ 5555611 (+) True LOC120552695
XM_039790206.1 mRNA downstream 547985 5750881 ~ 5817627 (+) True reck
XM_039790046.1 mRNA downstream 651744 5854640 ~ 5895766 (+) True tgfbr1b
XM_039789959.1 mRNA downstream 706981 5909877 ~ 5928609 (+) True lancl2
XM_039789960.1 mRNA downstream 731124 5934020 ~ 5948852 (+) True vopp1
unassigned_transcript_1388 other upstream 344475 4858027 ~ 4858112 (+) True trnas-acu_1
unassigned_transcript_1387 other upstream 351177 4851324 ~ 4851410 (+) True trnas-gcu_48
unassigned_transcript_1386 other upstream 351991 4850513 ~ 4850596 (+) True trnas-gcu_47
unassigned_transcript_1384 other upstream 358470 4844032 ~ 4844117 (+) True trnas-gcu_46
unassigned_transcript_1383 other upstream 359877 4842631 ~ 4842710 (+) True trnas-gcu_45
unassigned_transcript_1392 other downstream 367109 5570005 ~ 5570086 (+) True trnas-gcu_52
unassigned_transcript_1393 other downstream 369156 5572052 ~ 5572133 (+) True trnas-gcu_53
unassigned_transcript_1394 other downstream 370166 5573062 ~ 5573143 (+) True trnas-gcu_54
unassigned_transcript_1395 other downstream 373225 5576121 ~ 5576202 (+) True trnas-gcu_55
unassigned_transcript_1396 other downstream 375714 5578610 ~ 5578692 (+) True trnas-gcu_56

Expression Profile