RNA id: TU295373


Basic Information

Item Value
RNA id TU295373
length 457
lncRNA type inter_gene
GC content 0.57
exon number 3
gene id G218240
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 6649801 ~ 6717709 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTTCAGTACAGACTCCTGGGCAGGTAGGGCACGTTTCACAGGTGGGACCCTGGAATTTGGGGTCAGTGCACTTGCAAGTGCCACATTCACACGTTCCTCGGCCGTTACAGATCTGCTTGTTGCTGGCCATACACGTGCTGTTGTCCAGAGAGCAATCGCAGGCACTCCCGGTCCACATGGGGTCACAGATACACACTCTGCACTCACAGCGGCCATGCCCTCCACACAGTTTGTTTCCAGAGCGGTCGCAGTTGAAGTTGTCACACTCGCAGTACAGGCCGCTGTACCTCTCCTCAGGGTTGTCCCTCTTCTTGCACTCACATGTGCCGCACACACAGTCTCCGTTGTTGCTGCAGATGTCGGTGCCGTTGTCTTTGCGGCAGGTCCGGTCCATGTCCTCTGTGGCCACATCGTTGCTGCTGCATTCACACTGTCTGCCCACGCTCCCAGATTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295375 lncRNA upstream 1367 6640764 ~ 6648434 (+) True G218241
TU295363 lncRNA upstream 20784 6580571 ~ 6629017 (+) True G218232
XR_005637937.1 lncRNA upstream 53273 6594089 ~ 6596528 (+) True LOC120551943
TU295317 lncRNA upstream 200598 6448148 ~ 6449203 (+) True G218190
TU295261 lncRNA upstream 391189 6250738 ~ 6258612 (+) True G218155
TU295409 lncRNA downstream 233579 6951288 ~ 7008758 (+) True G218270
TU295411 lncRNA downstream 315220 7032929 ~ 7033231 (+) True G218272
TU295413 lncRNA downstream 345933 7063642 ~ 7063877 (+) True G218274
TU295414 lncRNA downstream 349666 7067375 ~ 7067591 (+) True G218275
TU295415 lncRNA downstream 399636 7117345 ~ 7117577 (+) True G218276
XM_039789540.1 mRNA upstream 55771 6567730 ~ 6594030 (+) True mkxa
XM_039789541.1 mRNA upstream 55771 6567736 ~ 6594030 (+) False mkxa
XM_039790868.1 mRNA upstream 100537 6482474 ~ 6549264 (+) True odad2
XM_039790850.1 mRNA downstream 642897 7360606 ~ 7373347 (+) False LOC120552660
XM_039790851.1 mRNA downstream 642897 7360606 ~ 7373347 (+) False LOC120552660
XM_039790855.1 mRNA downstream 642897 7360606 ~ 7373347 (+) False LOC120552660
XM_039790853.1 mRNA downstream 642897 7360606 ~ 7373347 (+) False LOC120552660
XM_039790854.1 mRNA downstream 642897 7360606 ~ 7373347 (+) False LOC120552660
unassigned_transcript_1406 other upstream 1058718 5591002 ~ 5591083 (+) True trnas-gcu_66
unassigned_transcript_1405 other upstream 1059910 5589807 ~ 5589891 (+) True trnas-gcu_65
unassigned_transcript_1404 other upstream 1061273 5588447 ~ 5588528 (+) True trnas-gcu_64
unassigned_transcript_1403 other upstream 1062463 5587256 ~ 5587338 (+) True trnas-gcu_63
unassigned_transcript_1402 other upstream 1063824 5585896 ~ 5585977 (+) True trnas-gcu_62
unassigned_transcript_1407 other downstream 563997 7281706 ~ 7281777 (+) True trnaw-cca_30
unassigned_transcript_1408 other downstream 571521 7289230 ~ 7289301 (+) True trnaw-cca_31
TU295439 other downstream 649802 7367511 ~ 7373341 (+) False LOC120552660
TU295442 other downstream 649802 7367511 ~ 7373341 (+) False LOC120552660
TU295651 other downstream 1832161 8549870 ~ 8581127 (+) False LOC120552265

Expression Profile