RNA id: TU295379


Basic Information

Item Value
RNA id TU295379
length 435
lncRNA type inter_gene
GC content 0.51
exon number 3
gene id G218244
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 6657821 ~ 6660277 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACTTGTTCCCAGGTTCTTGACGTTCTCCAGATCGTCCTTCATGGAGTAGGACAGGTCCATCAAGTAGTACAGGTCGATGGGATAATCTTCCGCTCGTTTGAACTTTAAGTTGAAAGTTTGAGGCTCACCAGATCGGAGGGTGAGGCTGAGTTTCTGGGGCTGGATCTGCGTGATGTCCTCGGGCCTCAGTTTCTCTGCTCCCTTTCTGCGATTTGTCACTGCTTTGTTCTTGAGAGTCTTCTGTTCCCCGTGTGGGTTCTCGATCATGGCATCACTACAGCCCCTTTTTATCAAAGACTGCAGCTCGTCACAACGGGTCGACACAGTCTCACCCTGTTTCAGGAATTTCGGGTCTTTACACCAGCCACATTTGGCTCCCGCCTGGATGCACTCCCCGCAGTATTTGGCATTGGCATTGATGCACTCGTTCCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295375 lncRNA upstream 9387 6640764 ~ 6648434 (+) True G218241
TU295363 lncRNA upstream 28804 6580571 ~ 6629017 (+) True G218232
XR_005637937.1 lncRNA upstream 61293 6594089 ~ 6596528 (+) True LOC120551943
TU295317 lncRNA upstream 208618 6448148 ~ 6449203 (+) True G218190
TU295261 lncRNA upstream 399209 6250738 ~ 6258612 (+) True G218155
TU295409 lncRNA downstream 291011 6951288 ~ 7008758 (+) True G218270
TU295411 lncRNA downstream 372652 7032929 ~ 7033231 (+) True G218272
TU295413 lncRNA downstream 403365 7063642 ~ 7063877 (+) True G218274
TU295414 lncRNA downstream 407098 7067375 ~ 7067591 (+) True G218275
TU295415 lncRNA downstream 457068 7117345 ~ 7117577 (+) True G218276
XM_039789540.1 mRNA upstream 63791 6567730 ~ 6594030 (+) True mkxa
XM_039789541.1 mRNA upstream 63791 6567736 ~ 6594030 (+) False mkxa
XM_039790868.1 mRNA upstream 108557 6482474 ~ 6549264 (+) True odad2
XM_039790850.1 mRNA downstream 700329 7360606 ~ 7373347 (+) False LOC120552660
XM_039790851.1 mRNA downstream 700329 7360606 ~ 7373347 (+) False LOC120552660
XM_039790855.1 mRNA downstream 700329 7360606 ~ 7373347 (+) False LOC120552660
XM_039790853.1 mRNA downstream 700329 7360606 ~ 7373347 (+) False LOC120552660
XM_039790854.1 mRNA downstream 700329 7360606 ~ 7373347 (+) False LOC120552660
unassigned_transcript_1406 other upstream 1066738 5591002 ~ 5591083 (+) True trnas-gcu_66
unassigned_transcript_1405 other upstream 1067930 5589807 ~ 5589891 (+) True trnas-gcu_65
unassigned_transcript_1404 other upstream 1069293 5588447 ~ 5588528 (+) True trnas-gcu_64
unassigned_transcript_1403 other upstream 1070483 5587256 ~ 5587338 (+) True trnas-gcu_63
unassigned_transcript_1402 other upstream 1071844 5585896 ~ 5585977 (+) True trnas-gcu_62
unassigned_transcript_1407 other downstream 621429 7281706 ~ 7281777 (+) True trnaw-cca_30
unassigned_transcript_1408 other downstream 628953 7289230 ~ 7289301 (+) True trnaw-cca_31
TU295439 other downstream 707234 7367511 ~ 7373341 (+) False LOC120552660
TU295442 other downstream 707234 7367511 ~ 7373341 (+) False LOC120552660
TU295651 other downstream 1889593 8549870 ~ 8581127 (+) False LOC120552265

Expression Profile