RNA id: TU295413


Basic Information

Item Value
RNA id TU295413
length 236
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G218274
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 7063642 ~ 7063877 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCTGAAGATCTCGCCCAGGCCCTTCAGCACGCCTTTCTTGGCTTTGTTCTTGTCcttgtctttctccttctctttatCCCTTTCAGGTTTCCTCTTTTCCTTCCCCCCAACCTTGTCCCGATCTTTCTGCCTGTCATCTTTGGAGAGGTTGCCGTTCAGCCCAGGTCCCACAATGAGGTCGCCGCTGGTGGACATCGACTCGCGACCTGATCTGGAACTTCCCTCCGTGTCTTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295411 lncRNA upstream 30411 7032929 ~ 7033231 (+) True G218272
TU295409 lncRNA upstream 54884 6951288 ~ 7008758 (+) True G218270
TU295373 lncRNA upstream 345933 6649801 ~ 6717709 (+) True G218240
TU295379 lncRNA upstream 403365 6657821 ~ 6660277 (+) True G218244
TU295375 lncRNA upstream 415208 6640764 ~ 6648434 (+) True G218241
TU295414 lncRNA downstream 3498 7067375 ~ 7067591 (+) True G218275
TU295415 lncRNA downstream 53468 7117345 ~ 7117577 (+) True G218276
TU295416 lncRNA downstream 77684 7141561 ~ 7141778 (+) True G218277
TU295418 lncRNA downstream 115599 7179476 ~ 7179708 (+) True G218279
TU295419 lncRNA downstream 209474 7273351 ~ 7273594 (+) True G218280
XM_039789540.1 mRNA upstream 469612 6567730 ~ 6594030 (+) True mkxa
XM_039789541.1 mRNA upstream 469612 6567736 ~ 6594030 (+) False mkxa
XM_039790868.1 mRNA upstream 514378 6482474 ~ 6549264 (+) True odad2
XM_039790850.1 mRNA downstream 296729 7360606 ~ 7373347 (+) False LOC120552660
XM_039790851.1 mRNA downstream 296729 7360606 ~ 7373347 (+) False LOC120552660
XM_039790855.1 mRNA downstream 296729 7360606 ~ 7373347 (+) False LOC120552660
XM_039790853.1 mRNA downstream 296729 7360606 ~ 7373347 (+) False LOC120552660
XM_039790854.1 mRNA downstream 296729 7360606 ~ 7373347 (+) False LOC120552660
unassigned_transcript_1406 other upstream 1472559 5591002 ~ 5591083 (+) True trnas-gcu_66
unassigned_transcript_1405 other upstream 1473751 5589807 ~ 5589891 (+) True trnas-gcu_65
unassigned_transcript_1404 other upstream 1475114 5588447 ~ 5588528 (+) True trnas-gcu_64
unassigned_transcript_1403 other upstream 1476304 5587256 ~ 5587338 (+) True trnas-gcu_63
unassigned_transcript_1402 other upstream 1477665 5585896 ~ 5585977 (+) True trnas-gcu_62
unassigned_transcript_1407 other downstream 217829 7281706 ~ 7281777 (+) True trnaw-cca_30
unassigned_transcript_1408 other downstream 225353 7289230 ~ 7289301 (+) True trnaw-cca_31
TU295439 other downstream 303634 7367511 ~ 7373341 (+) False LOC120552660
TU295442 other downstream 303634 7367511 ~ 7373341 (+) False LOC120552660
TU295651 other downstream 1485993 8549870 ~ 8581127 (+) False LOC120552265

Expression Profile