RNA id: TU295621


Basic Information

Item Value
RNA id TU295621
length 501
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G218422
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 8430438 ~ 8430938 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagatttgtgcagtatacgattgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctcattgtatgagctgaaagtttagagggacggccgggtcttcgtagatttgtagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttctccacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgctttacacagacctctgagactatcacagagcaggtgcatttatacggagacttgattacacacagctggattctatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295620 lncRNA upstream 12353 8408500 ~ 8418085 (+) True G218421
TU295619 lncRNA upstream 29359 8398919 ~ 8401079 (+) True G218420
XR_005637994.1 lncRNA upstream 117838 8304796 ~ 8312600 (+) True LOC120552410
TU295577 lncRNA upstream 340430 8089556 ~ 8090008 (+) True G218382
TU295522 lncRNA upstream 478574 7805886 ~ 7951864 (+) True G218353
TU295624 lncRNA downstream 33880 8464818 ~ 8465084 (+) True G218425
TU295668 lncRNA downstream 190562 8621500 ~ 8621720 (+) True G218449
TU295763 lncRNA downstream 203162 8634100 ~ 8634648 (+) True G218521
TU295770 lncRNA downstream 230668 8661606 ~ 8661968 (+) True G218528
XR_005637956.1 lncRNA downstream 282365 8713303 ~ 8720985 (+) False LOC120552042
XM_039789948.1 mRNA upstream 52749 8372816 ~ 8377689 (+) True rmdn1
XM_039790471.1 mRNA upstream 96940 8326552 ~ 8333498 (+) True idi1
XM_039790472.1 mRNA upstream 96940 8326556 ~ 8333498 (+) False idi1
XM_039790473.1 mRNA upstream 96940 8328831 ~ 8333498 (+) False idi1
XM_039790896.1 mRNA upstream 150544 8056604 ~ 8279894 (+) True adarb2
XM_039790136.1 mRNA downstream 68224 8499162 ~ 8506382 (+) False LOC120552258
XM_039790137.1 mRNA downstream 68235 8499173 ~ 8506881 (+) True LOC120552258
XM_039790143.1 mRNA downstream 76811 8507749 ~ 8521706 (+) True ccdc135
XM_039790145.1 mRNA downstream 76845 8507783 ~ 8521706 (+) False ccdc135
XM_039790146.1 mRNA downstream 77866 8508804 ~ 8521706 (+) False ccdc135
TU295439 other upstream 1057097 7367511 ~ 7373341 (+) False LOC120552660
TU295442 other upstream 1057097 7367511 ~ 7373341 (+) False LOC120552660
unassigned_transcript_1408 other upstream 1141137 7289230 ~ 7289301 (+) True trnaw-cca_31
unassigned_transcript_1407 other upstream 1148661 7281706 ~ 7281777 (+) True trnaw-cca_30
unassigned_transcript_1406 other upstream 2839355 5591002 ~ 5591083 (+) True trnas-gcu_66
TU295651 other downstream 118932 8549870 ~ 8581127 (+) False LOC120552265
TU295657 other downstream 119845 8550783 ~ 8606578 (+) False G218441
TU295664 other downstream 125278 8556216 ~ 8557253 (+) True G218445
TU295656 other downstream 170022 8600960 ~ 8606578 (+) True G218441
TU295658 other downstream 170022 8600960 ~ 8605823 (+) False G218441

Expression Profile