RNA id: TU295651


Basic Information

Item Value
RNA id TU295651
length 504
RNA type TUCP
GC content 0.50
exon number 4
gene id LOC120552265
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 8523299 ~ 8596356 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAATAGTCCTTATTACTCGAGGAGCACCAGAGAAGTGGACACAATGGCATCTCCAACCCCTCTGTCCAAGGCCAACACCACCTTCTCTCTGGCTTTGCTCAAAAAGTTTGGAGATGACGACAAGACGGCAAACATCTTCTACTCCCCTTTCAGCATCTCTTCAGCCCTGGCTATGGTGATGCTGGGGGCCAGAGGAAACACAGCCACACAGATGTCAGAGTGCCTGAAAACCAAGGATTATCAGGATGACGTCCATGTTAGCTTTGGCAAACTGCTGAGTGAGCTCAACAAGGCTGATGCTCCGTATGCCctcagtgttgccaacaggcTGTACGGGGAGCAGTCCTACCAGTttgttgagGATTTCTTAGGAAAAACCAAGAAGTACTACAACGCAGAGCTGGAGACTGTTGACTTCAAAGCTGGCTCAGAGGCCGCCAGGCTCAACATCAACAGCTGGGTGCAGAAGCAGACTCAAGGTGGATCATACACACTAACATTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295624 lncRNA upstream 84786 8464818 ~ 8465084 (+) True G218425
TU295621 lncRNA upstream 118932 8430438 ~ 8430938 (+) True G218422
TU295620 lncRNA upstream 131785 8408500 ~ 8418085 (+) True G218421
TU295619 lncRNA upstream 148791 8398919 ~ 8401079 (+) True G218420
XR_005637994.1 lncRNA upstream 237270 8304796 ~ 8312600 (+) True LOC120552410
TU295668 lncRNA downstream 40373 8621500 ~ 8621720 (+) True G218449
TU295763 lncRNA downstream 52973 8634100 ~ 8634648 (+) True G218521
TU295770 lncRNA downstream 80479 8661606 ~ 8661968 (+) True G218528
XR_005637956.1 lncRNA downstream 132176 8713303 ~ 8720985 (+) False LOC120552042
TU295773 lncRNA downstream 132219 8713346 ~ 8721068 (+) True LOC120552042
XM_039790150.1 mRNA upstream 1395 8536825 ~ 8548475 (+) False LOC120552264
XM_039790149.1 mRNA upstream 1397 8523276 ~ 8548473 (+) True LOC120552264
XM_039790147.1 mRNA upstream 14580 8523269 ~ 8535290 (+) True LOC120552263
XM_039790148.1 mRNA upstream 15349 8523269 ~ 8534521 (+) False LOC120552263
XM_039790143.1 mRNA upstream 28164 8507749 ~ 8521706 (+) True ccdc135
XM_039790151.1 mRNA downstream 2892 8584019 ~ 8596356 (+) True LOC120552265
XM_039790154.1 mRNA downstream 5896 8587023 ~ 8596356 (+) False LOC120552265
XM_039790153.1 mRNA downstream 5906 8587033 ~ 8596356 (+) False LOC120552265
XM_039790155.1 mRNA downstream 6157 8587284 ~ 8596356 (+) False LOC120552265
XM_039790922.1 mRNA downstream 44318 8625445 ~ 8630973 (+) True pigm
TU295439 other upstream 1176529 7367511 ~ 7373341 (+) False LOC120552660
TU295442 other upstream 1176529 7367511 ~ 7373341 (+) False LOC120552660
unassigned_transcript_1408 other upstream 1260569 7289230 ~ 7289301 (+) True trnaw-cca_31
unassigned_transcript_1407 other upstream 1268093 7281706 ~ 7281777 (+) True trnaw-cca_30
unassigned_transcript_1406 other upstream 2958787 5591002 ~ 5591083 (+) True trnas-gcu_66
TU295656 other downstream 19833 8600960 ~ 8606578 (+) True G218441
TU295658 other downstream 19833 8600960 ~ 8605823 (+) False G218441
XR_005638067.1 other downstream 157448 8738575 ~ 8738642 (+) True LOC120552752
XR_005638015.1 other downstream 630791 9211918 ~ 9230163 (+) False rnpc3
TU295977 other downstream 795817 9376944 ~ 9378147 (+) True G218694

Expression Profile