RNA id: XM_039790156.1


Basic Information

Item Value
RNA id XM_039790156.1
length 1733
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC120552265
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 8523299 ~ 8596356 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTCGGGAGTCAGCTTGTAAATGGTAAAACTGAAGCTTCAAACAGAAGTCTTCCTGTGAAAAGGAAATCCACCTTCTTACTCGAGGACCACCAGGAAAGTCTCTGTCTACACAATGGCATCTCCAACCCCTCTGTCCAAGGCCAACACCACCTTCTCTCTGGCTTTGCTCAAAAAGTTTGGAGATGACGACAAGACGGCAAACATCTTCTACTCCCCTTTCAGCATCTCTTCAGCCCTGGCTATGGTGATGCTGGGGGCCAGAGGAAACACAGCCACACAGATGTCAGAGTGCCTGAAAACCAAGGATTATCAGGATGACGTCCATGTTAGCTTTGGCAAACTGCTGAGTGAGCTCAACAAGGCTGATGCTCCGTATGCCctcagtgttgccaacaggcTGTACGGGGAGCAGTCCTACCAGTttgttgagGATTTCTTAGGAAAAACCAAGAAGTACTACAACGCAGAGCTGGAGACTGTTGACTTCAAAGCTGGCTCAGAGGCCGCCAGGCTCAACATCAACAGCTGGGTGCAGAAGCAGACTCAAGATAAAATTAAGGATCTGTTGGCCAAGGGTGATGTGGACAGCCTAAGCAGGCTGGTGCTGGTTAATGCCATGTACTTCAAAAGCGACTGGAACAGGCAGTTTCAGCAGTATGCCACACGGGATGCTCAGTTTAGACTCACCAAGAATGACACCAAGTCAGTGAAGATGATGCACCAGAAAACCTGGTTCCCTTTTTCCGACAACCCTAAAGCCAACTGCAAGATCCTAGAGATGCCTTACAAAGGGAAGGAGCTCAGCATGCTCATCTTTTTACCCAATGAGATGGAGGACAGCACAACAGGTCTGGAGaagCTGGAGAAGCAGCTGACCTATGAGAACTTTATGGAGTGGACTCGTCCAGACATGATGAATAATGTTGAGGTCCAGGTGGGGCTGCCTCGGTTCAAGATGGAGGAGACGTATGACATGGAGGAAGTCCTGGTCAGCATGGGCATGGTGAATGCCTTTGACGGAGCAAAGAGTGACTTCTCTGGCATGTCTCCTGCCAACGACCTGGTACTGTCAAAAGTCGTCCACAAGGCTTTTGTGGAGGTCAACGAGGAGGGAactgaggctgctgctgctgccactgctgctttGATGCTGATGGGCTGTTGCATGACCATGCATCCACCCGCCATGTTCATTGCAGACCATcccttcctcttcttcatccGACATAACTCCTCAATGAGCGTTCTCTTTGCTGGCCGATACTGCTCCCCTGAGTGAGCAATACATAATTTAGAGTAGTGTTACTCAACTGGAGGGGGCGTTAGAATACATCTAGTATTGGAACAGTGTACCATTTTATTTGGTAtaactttaaaaatgttaagAATTACCACTCTAGAGTTTCCTGAAGCTAATCATAGCCTGAGTTCCCATCACCAGAATGATGAGTAAAAACTGCGGTGTTGAATGTCCTTAACTGTGACTACTTGTTTGCATCACTTCTTATATGAGGGAGGGAATGATTCTGTGTTCATCCTTAACATTATGTTCTTGCACTGTTCTTTGTATCTTTTGCCCTTAATCTCAATCTCATCCTTAGGATCTTGTTTACTTTCTGTCCTTGGTAATTATTGGAATTGTAATCAACAAAGTGCAATTATTTGTTATTGTACCACTATGCATGTAATGAATATAGACTATAAAGATAAAGAGTTTATATGAATGTTTGAA

Function

GO:

id name namespace
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0005615 extracellular space cellular_component
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295624 lncRNA upstream 113916 8464818 ~ 8465084 (+) True G218425
TU295621 lncRNA upstream 148062 8430438 ~ 8430938 (+) True G218422
TU295620 lncRNA upstream 160915 8408500 ~ 8418085 (+) True G218421
TU295619 lncRNA upstream 177921 8398919 ~ 8401079 (+) True G218420
XR_005637994.1 lncRNA upstream 266400 8304796 ~ 8312600 (+) True LOC120552410
TU295668 lncRNA downstream 25144 8621500 ~ 8621720 (+) True G218449
TU295763 lncRNA downstream 37744 8634100 ~ 8634648 (+) True G218521
TU295770 lncRNA downstream 65250 8661606 ~ 8661968 (+) True G218528
XR_005637956.1 lncRNA downstream 116947 8713303 ~ 8720985 (+) False LOC120552042
TU295773 lncRNA downstream 116990 8713346 ~ 8721068 (+) True LOC120552042
XM_039790158.1 mRNA upstream 6269 8562648 ~ 8572731 (+) True LOC120552267
XM_039790150.1 mRNA upstream 30525 8536825 ~ 8548475 (+) False LOC120552264
XM_039790149.1 mRNA upstream 30527 8523276 ~ 8548473 (+) True LOC120552264
XM_039790147.1 mRNA upstream 43710 8523269 ~ 8535290 (+) True LOC120552263
XM_039790148.1 mRNA upstream 44479 8523269 ~ 8534521 (+) False LOC120552263
XM_039790922.1 mRNA downstream 29089 8625445 ~ 8630973 (+) True pigm
XM_039789688.1 mRNA downstream 140756 8737112 ~ 8739902 (+) True rps20
XM_039790974.1 mRNA downstream 144733 8741089 ~ 8750165 (+) False zgc:56231
XM_039790972.1 mRNA downstream 144734 8741090 ~ 8750456 (+) True zgc:56231
XM_039790973.1 mRNA downstream 144734 8741090 ~ 8750456 (+) False zgc:56231
TU295664 other upstream 21747 8556216 ~ 8557253 (+) True G218445
TU295439 other upstream 1205659 7367511 ~ 7373341 (+) False LOC120552660
TU295442 other upstream 1205659 7367511 ~ 7373341 (+) False LOC120552660
unassigned_transcript_1408 other upstream 1289699 7289230 ~ 7289301 (+) True trnaw-cca_31
unassigned_transcript_1407 other upstream 1297223 7281706 ~ 7281777 (+) True trnaw-cca_30
TU295656 other downstream 4604 8600960 ~ 8606578 (+) True G218441
TU295658 other downstream 4604 8600960 ~ 8605823 (+) False G218441
XR_005638067.1 other downstream 142219 8738575 ~ 8738642 (+) True LOC120552752
XR_005638015.1 other downstream 615562 9211918 ~ 9230163 (+) False rnpc3
TU295977 other downstream 780588 9376944 ~ 9378147 (+) True G218694

Expression Profile