RNA id: TU295763


Basic Information

Item Value
RNA id TU295763
length 549
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G218521
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 8634100 ~ 8634648 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgagtgagagagtgggTGTAACCAATTAGGGCAAATGGTGTGCAAAGCAGCAAAGAGTTGGGTATGAACGGTCACGCAACCTTGCATGGTATAGGATTATAAGTCTTGGTctgcacacaaacgcacacacacgctctctctctctcccccacctcACAGATACAGCTGTCAACAAGCATCAAACACTTGCTTACACTACGGTTGCCCTAAGCCATCACTCCTCTCTGTTGATTGGATGTGcgcttttcattgttttcaccccTTTCCCGAGCTAACTTCTCTTTTCTCACCTCTTGGTTTTGTCTCTccacttctctctcttcctctctgttacGTTCTTTGCCATTCTCACCCCTTCCCCTCTTTGTAAAGAATAAGTGTCGCATGGGGTGATGGTGTGCGTGCATGCTGATGattattaaacatttaaagtGAGACAAAAGCAAAGTACTCCTTTGGGGAAAAGTAAAAGAGATACTACACACTTTAGCATTACTTGATTGTTACTTATGAAGAgaactgtgtatgtgtttaaaagaggaacaat

Function

GO: NA

KEGG:

id description
ko00190 Oxidative phosphorylation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295668 lncRNA upstream 12380 8621500 ~ 8621720 (+) True G218449
TU295624 lncRNA upstream 169016 8464818 ~ 8465084 (+) True G218425
TU295621 lncRNA upstream 203162 8430438 ~ 8430938 (+) True G218422
TU295620 lncRNA upstream 216015 8408500 ~ 8418085 (+) True G218421
TU295619 lncRNA upstream 233021 8398919 ~ 8401079 (+) True G218420
TU295770 lncRNA downstream 26958 8661606 ~ 8661968 (+) True G218528
XR_005637956.1 lncRNA downstream 78655 8713303 ~ 8720985 (+) False LOC120552042
TU295773 lncRNA downstream 78698 8713346 ~ 8721068 (+) True LOC120552042
TU295775 lncRNA downstream 78698 8713346 ~ 8721068 (+) False LOC120552042
TU295784 lncRNA downstream 92124 8726772 ~ 8728214 (+) True G218537
XM_039790922.1 mRNA upstream 3127 8625445 ~ 8630973 (+) True pigm
XM_039790156.1 mRNA upstream 37744 8579000 ~ 8596356 (+) False LOC120552265
XM_039789688.1 mRNA downstream 102464 8737112 ~ 8739902 (+) True rps20
XM_039790974.1 mRNA downstream 106441 8741089 ~ 8750165 (+) False zgc:56231
XM_039790972.1 mRNA downstream 106442 8741090 ~ 8750456 (+) True zgc:56231
XM_039790973.1 mRNA downstream 106442 8741090 ~ 8750456 (+) False zgc:56231
XM_039789529.1 mRNA downstream 116272 8750920 ~ 8755753 (+) True LOC120551930
TU295657 other upstream 27522 8550783 ~ 8606578 (+) False G218441
TU295656 other upstream 27522 8600960 ~ 8606578 (+) True G218441
TU295658 other upstream 28277 8600960 ~ 8605823 (+) False G218441
TU295651 other upstream 52973 8549870 ~ 8581127 (+) False LOC120552265
TU295664 other upstream 76847 8556216 ~ 8557253 (+) True G218445
XR_005638067.1 other downstream 103927 8738575 ~ 8738642 (+) True LOC120552752
XR_005638015.1 other downstream 577270 9211918 ~ 9230163 (+) False rnpc3
TU295977 other downstream 742296 9376944 ~ 9378147 (+) True G218694
TU295978 other downstream 823535 9458183 ~ 9458700 (+) True G218695
unassigned_transcript_1412 other downstream 1597838 10232486 ~ 10232557 (+) True trnac-gca_34

Expression Profile