RNA id: TU295840


Basic Information

Item Value
RNA id TU295840
length 2138
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G218587
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 8789828 ~ 8791965 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAAACAAGAGTTGAATTAAAGGATAACGGTCCATAACTCAAGATTTAAGTAATGCTGACCAACACTATTCCAAATGCTATCAAACCCAGTGTCAGTCATTTCCCTCCCTTTTTGCACCAAGATGGTACAGGCATTATCCAAATGGAATACCCTTTAGTGTTTACTGCCTGATTGTAGTGTGTTCACAGTTTATATCTCAGAATTATTCAAGTAAAATGAAGACTTCCTTTGGCATGCATGATTGTATTCCCCTGAAATGAACACTGTGGTAATTCCAATATGCATACTTCTCCATTGTCTATTATTGTCAAGTAATAGAAGTTCCTTCCAATGGTCTCTTTGGAGCATCTTGGTTATTGCATAGGACATTGATCACCATATAATAATAGTGTCGAGGGACACATGCCATTCTCCACAAAGAATGTGGACAATGTGACAAAGTTACAAGGAAATCTGGAAAATGACCCGAACACATGGCTTATTAACATTATTTTTGGTCACTGTCCATGTTgtgtgactgtttttttttagtgttaTTTTAGATCATGGATTTATAAATCCAGGTTGTAcagaataatacaaaaaaacaaacataaatttGAACATAAGccttttttcaataaaaataattccaacaTAGTAatcactttctttctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatatatatcacatTACATTTGTACTTACATCAAAAAAAATCAAGTAAAATATGTAACAACCCCACTGAAAAAGTGTCAGGGGGAAAAGAACAGCTGTTGGCCAACAGATGAGACCTGGGTTTTAGAAAGGCTGTTGTTGCTGAGGCACCTTCATGTACTAGCCATACCGACAGTCTTACACTCACTCATCTGCATATCGAGCATTTTGTTAAATACTGCATAAATAAAACTCTGAATCAaggctatataaaaaaaactaagtttAGTACCAATAGAAACCAATATTTCATTTTAGCAGATCAATTTCAATTTGATCTCACATGCCTCTCAGGTCCTAAGGAAACGCATAACTGACATCATTCTCTGATGtgcatgttgtttgtgttaagAGTATATTCTCCAGTCAGTCTCTTGTGACTAACTAAGTGAAAATGTTAAGCCAAAgtgtatgttatatattttaaggtCTCTGGGTTAAGGCGCAGAAAAGCTATCTTTTACTTGTTTCTAGCATTAGAAGACACTTACAATACATACGAGAACACACGAGAAAGTACCATTTTAGTTTGGAAAAAGTGTGTAGTGCATCCACTCTCTACATAGACACTCTTATGTTATAGGTTTATATTTAATGACTTTAACTGCAATTCATTAAAAGGCTGAAATCTACCAAAGTGCATGATGCCAACGCCGTGGTCCATTACCTCTGTTGGTTATTTCCATGTTATTTTTAGACTAAGGACGCCATTATGTTAGGCCTCAGGTTAGTCTTTTCCCTGCTATTAATAACCTCACGTTATTTTTAGCAGAGATGGTTAAGGTTAAAGCAAATAGCAACATAGTTTAATTCAACTTTAGATTAAAAAGGCATCAAATAGAAATTGCATCGTGGCCGGgatggttcagtgggtagagcaggcgcacatatactgagaggtttatgcctcgactcagaggtccagggtttgaatccgacctgtgactatttcctgcatgtcttccccctctctgacctagctgtcctgtcaaataaaggcggaaaagtcaaaaatataatcataaaaaaaaaatctgacacCTTGTTGCACACACTCTTACAAGTAGAACATCACACCAAGAACGCAGATGTGATTTATGATGGCCAACAAAGCCCAGTTGATTGATTACATGCAACACTTCTCTTCTAAAACTAGACTAGGAAACCAACCCTCTTCCCTGATATCAGACTGATGTACCGACAGCTACTTCTCCATTTACATTAAAAGCTGATGTTTTTGGTTTTATCCAATTCATTTTCTAATTTCTGTACTGTCCATCAGTATGATACCACAGGCTCAAAGGTCAGGTTTACATCATTATTTCTTGCCATTTGAAAAAGTAGTGATTGTTCACTAATGCAGACCAAGCTTACAgcttaaaaggtgctctaaggcataaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295823 lncRNA downstream 34967 8753511 ~ 8754861 (-) True G218571
TU295820 lncRNA downstream 39376 8749593 ~ 8750452 (-) True G218568
TU295814 lncRNA downstream 45519 8743847 ~ 8744309 (-) True G218563
TU295812 lncRNA downstream 49926 8737144 ~ 8739902 (-) True G218561
TU295764 lncRNA downstream 155143 8634100 ~ 8634685 (-) True G218522
TU295841 lncRNA upstream 4532 8796497 ~ 8796699 (-) True G218588
TU295866 lncRNA upstream 5905 8797870 ~ 8798209 (-) False prkdc
TU295869 lncRNA upstream 80987 8872952 ~ 8873160 (-) True G218614
TU295898 lncRNA upstream 147931 8939896 ~ 8940729 (-) True G218639
TU295899 lncRNA upstream 156255 8948220 ~ 8949087 (-) True G218640
XM_039790545.1 mRNA downstream 10006 8768220 ~ 8779822 (-) True ncf2
XM_039789687.1 mRNA downstream 55009 8724449 ~ 8734819 (-) True LOC120552044
XM_039789686.1 mRNA downstream 77075 8639541 ~ 8712753 (-) True LOC120552041
XM_039790140.1 mRNA downstream 291814 8477428 ~ 8498014 (-) False snx16
XM_039790142.1 mRNA downstream 291814 8484281 ~ 8498014 (-) False snx16
XM_039790552.1 mRNA upstream 5816 8797781 ~ 8851726 (-) True prkdc
XM_039789528.1 mRNA upstream 165444 8957409 ~ 8970638 (-) False LOC120551928
XM_039789526.1 mRNA upstream 165444 8957409 ~ 8970638 (-) True LOC120551928
XM_039789421.1 mRNA upstream 237158 9029123 ~ 9083108 (-) True olfm3a
XM_039789422.1 mRNA upstream 237158 9029123 ~ 9083107 (-) False olfm3a
TU295702 other downstream 358898 8430464 ~ 8430930 (-) True G218471
TU295672 other downstream 593949 8194929 ~ 8195879 (-) True G218453
unassigned_transcript_1411 other downstream 1447933 7341824 ~ 7341895 (-) True trnaw-cca_34
unassigned_transcript_1410 other downstream 1487061 7302696 ~ 7302767 (-) True trnaw-cca_33
unassigned_transcript_1409 other downstream 1488688 7301069 ~ 7301140 (-) True trnaw-cca_32
TU296313 other upstream 1785434 10577399 ~ 10669527 (-) True G218950
TU296891 other upstream 4397688 13189653 ~ 13194041 (-) False bmi1a
XR_005637977.1 other upstream 4896456 13688421 ~ 13696741 (-) True pdk3a
XR_005637996.1 other upstream 5032828 13824793 ~ 13940381 (-) False sema5a
TU297468 other upstream 6254183 15046148 ~ 15048663 (-) False xkr9

Expression Profile