RNA id: TU295913


Basic Information

Item Value
RNA id TU295913
length 285
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G218649
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 8996104 ~ 8996388 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atggcatgaaaatttcactttatgaggttttttaacattaatatgcgttcccccagcctgcctatggtccccaattggcttgaaatggtgataggtgtaaaccgagccctgggtatcctgctctgcctttgagaaaatgaaagctcagatgggccgatctggaatcttgcttgttatgaggtcataacaagcaaggttacctcccctttctctgctttgcccgcccagagaatttggccaacccatgagagagagacatcatggctttcaaatgagcaaagtggc

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007218 neuropeptide signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295908 lncRNA downstream 37971 8957663 ~ 8958133 (-) False LOC120551928
TU295899 lncRNA downstream 47017 8948220 ~ 8949087 (-) True G218640
TU295898 lncRNA downstream 55375 8939896 ~ 8940729 (-) True G218639
TU295869 lncRNA downstream 122944 8872952 ~ 8873160 (-) True G218614
TU295866 lncRNA downstream 197895 8797870 ~ 8798209 (-) False prkdc
TU295944 lncRNA upstream 131634 9128022 ~ 9129646 (-) True G218671
XR_005637987.1 lncRNA upstream 177714 9174102 ~ 9185369 (-) True LOC120552334
TU296026 lncRNA upstream 300649 9297037 ~ 9297238 (-) True G218735
TU296030 lncRNA upstream 378471 9374859 ~ 9375212 (-) True G218739
XR_005637928.1 lncRNA upstream 418578 9414966 ~ 9415451 (-) True LOC120551892
XM_039789528.1 mRNA downstream 25466 8957409 ~ 8970638 (-) False LOC120551928
XM_039789526.1 mRNA downstream 25466 8957409 ~ 8970638 (-) True LOC120551928
XM_039790552.1 mRNA downstream 144378 8797781 ~ 8851726 (-) True prkdc
XM_039790545.1 mRNA downstream 216282 8768220 ~ 8779822 (-) True ncf2
XM_039789687.1 mRNA downstream 261285 8724449 ~ 8734819 (-) True LOC120552044
XM_039789421.1 mRNA upstream 32735 9029123 ~ 9083108 (-) True olfm3a
XM_039789422.1 mRNA upstream 32735 9029123 ~ 9083107 (-) False olfm3a
XM_039790291.1 mRNA upstream 90763 9087151 ~ 9173024 (-) True col11a1a
XM_039790295.1 mRNA upstream 92121 9088509 ~ 9173024 (-) False col11a1a
XM_039790294.1 mRNA upstream 92121 9088509 ~ 9173024 (-) False col11a1a
TU295702 other downstream 565174 8430464 ~ 8430930 (-) True G218471
TU295672 other downstream 800225 8194929 ~ 8195879 (-) True G218453
unassigned_transcript_1411 other downstream 1654209 7341824 ~ 7341895 (-) True trnaw-cca_34
unassigned_transcript_1410 other downstream 1693337 7302696 ~ 7302767 (-) True trnaw-cca_33
unassigned_transcript_1409 other downstream 1694964 7301069 ~ 7301140 (-) True trnaw-cca_32
TU296313 other upstream 1581011 10577399 ~ 10669527 (-) True G218950
TU296891 other upstream 4193265 13189653 ~ 13194041 (-) False bmi1a
XR_005637977.1 other upstream 4692033 13688421 ~ 13696741 (-) True pdk3a
XR_005637996.1 other upstream 4828405 13824793 ~ 13940381 (-) False sema5a
TU297468 other upstream 6049760 15046148 ~ 15048663 (-) False xkr9

Expression Profile