RNA id: TU295978


Basic Information

Item Value
RNA id TU295978
length 518
RNA type TUCP
GC content 0.45
exon number 1
gene id G218695
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 9458183 ~ 9458700 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

attcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatagaatccagctgtgtgtaatcaagtctccgtataaatgcacctgctcggtgatagtctcagaggtccgtgtaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtggagaagtttatagCCGGATTAGGATACAAAacgatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactacaaatctacgaagacccggccatccctctaaactttcagctcatacaatgagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatactgcacaaatctggc

Function

GO:

id name namespace
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295976 lncRNA upstream 121644 9336332 ~ 9336539 (+) True G218693
XR_005637936.1 lncRNA upstream 165530 9260442 ~ 9292653 (+) True LOC120551942
TU295962 lncRNA upstream 207424 9250470 ~ 9250759 (+) True G218687
XR_005638014.1 lncRNA upstream 247098 9208182 ~ 9211085 (+) True LOC120552481
TU295933 lncRNA upstream 285250 9166381 ~ 9172933 (+) True G218666
TU295971 lncRNA downstream 156140 9614840 ~ 9665678 (+) True G218690
TU295993 lncRNA downstream 288329 9747029 ~ 9747273 (+) True G218709
TU295994 lncRNA downstream 288645 9747345 ~ 9747706 (+) True G218710
TU296015 lncRNA downstream 353519 9812219 ~ 9813878 (+) True G218724
TU296018 lncRNA downstream 383619 9842319 ~ 9842709 (+) True G218727
XM_039790580.1 mRNA upstream 228306 9211918 ~ 9229877 (+) False rnpc3
XM_039790582.1 mRNA upstream 228306 9211918 ~ 9229877 (+) False rnpc3
XM_039790581.1 mRNA upstream 228306 9212052 ~ 9229877 (+) True rnpc3
XM_039790269.1 mRNA upstream 501643 8913264 ~ 8956540 (+) True abca4a
XM_039790842.1 mRNA downstream 1605 9460305 ~ 9463043 (+) True prmt6
XM_039790334.1 mRNA downstream 18083 9476783 ~ 9591177 (+) False ntng1a
XM_039790335.1 mRNA downstream 20365 9479065 ~ 9591177 (+) False ntng1a
XM_039790333.1 mRNA downstream 20366 9479066 ~ 9591177 (+) True ntng1a
XM_039790336.1 mRNA downstream 20367 9479067 ~ 9591177 (+) False ntng1a
TU295977 other upstream 80036 9376944 ~ 9378147 (+) True G218694
XR_005638015.1 other upstream 228020 9211918 ~ 9230163 (+) False rnpc3
XR_005638067.1 other upstream 719541 8738575 ~ 8738642 (+) True LOC120552752
TU295656 other upstream 851605 8600960 ~ 8606578 (+) True G218441
TU295658 other upstream 852360 8600960 ~ 8605823 (+) False G218441
unassigned_transcript_1412 other downstream 773786 10232486 ~ 10232557 (+) True trnac-gca_34
TU296163 other downstream 963886 10422586 ~ 10423249 (+) True G218848
TU296196 other downstream 1029567 10488267 ~ 10494988 (+) True G218875
TU296191 other downstream 1064738 10523438 ~ 10526204 (+) False dcaf11
XR_005637949.1 other downstream 1310675 10769375 ~ 10815975 (+) False zgc:101569

Expression Profile