RNA id: TU296018


Basic Information

Item Value
RNA id TU296018
length 289
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G218727
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 9842319 ~ 9842709 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGGGAAgatcttcttcatcttcttcttggCTTCCGCCGCAATCTTCTCCTCCGTTTCTTTCATCTCGGCCTGCAGCCGTTTCTCCTcgtcctttttcttcttctcctctgccTTTTTGGCTGCCTCTTCTGCCTTCTTTTTATCCGCTTCTTCTTTTGCTATTCGTTCCTCTTCCTTTATTCTGATGTAGTCCTCCTTCTTCAGAATAGGTGTGACAGGTGGGGAGATTTCTGGCGAAGTGGCGTAAGGGTCTATGGCTTTCTCTCTTAGCAACTCTGTCTGCTCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU296015 lncRNA upstream 28441 9812219 ~ 9813878 (+) True G218724
TU295994 lncRNA upstream 94613 9747345 ~ 9747706 (+) True G218710
TU295993 lncRNA upstream 95046 9747029 ~ 9747273 (+) True G218709
TU295971 lncRNA upstream 176641 9614840 ~ 9665678 (+) True G218690
TU295976 lncRNA upstream 505780 9336332 ~ 9336539 (+) True G218693
TU296019 lncRNA downstream 2245 9844954 ~ 9848196 (+) True G218728
TU296094 lncRNA downstream 121725 9964434 ~ 9964804 (+) True G218796
TU296137 lncRNA downstream 486546 10329255 ~ 10329525 (+) True G218831
TU296164 lncRNA downstream 581582 10424291 ~ 10424677 (+) True G218849
TU296170 lncRNA downstream 586300 10429009 ~ 10430063 (+) True G218855
XM_039790056.1 mRNA upstream 9256 9814806 ~ 9833063 (+) True nsmaf
XM_039790057.1 mRNA upstream 36882 9797181 ~ 9805437 (+) True rbbp8
XM_039789552.1 mRNA upstream 45897 9790312 ~ 9796422 (+) False fam168b
XM_039789550.1 mRNA upstream 45897 9790313 ~ 9796422 (+) True fam168b
XM_039789551.1 mRNA upstream 45897 9790633 ~ 9796422 (+) False fam168b
XM_039790289.1 mRNA downstream 558455 10401164 ~ 10415362 (+) True zmp:0000000991
XM_039790290.1 mRNA downstream 561945 10404654 ~ 10415362 (+) False zmp:0000000991
XM_039789774.1 mRNA downstream 621637 10464346 ~ 10473620 (+) False ngdn
XM_039789773.1 mRNA downstream 625829 10468538 ~ 10473620 (+) True ngdn
XM_039789796.1 mRNA downstream 665424 10508133 ~ 10512302 (+) False thtpa
TU295978 other upstream 383619 9458183 ~ 9458700 (+) True G218695
TU295977 other upstream 464172 9376944 ~ 9378147 (+) True G218694
XR_005638015.1 other upstream 612156 9211918 ~ 9230163 (+) False rnpc3
XR_005638067.1 other upstream 1103677 8738575 ~ 8738642 (+) True LOC120552752
TU295658 other upstream 1236496 8600960 ~ 8605823 (+) False G218441
unassigned_transcript_1412 other downstream 389777 10232486 ~ 10232557 (+) True trnac-gca_34
TU296163 other downstream 579877 10422586 ~ 10423249 (+) True G218848
TU296196 other downstream 645558 10488267 ~ 10494988 (+) True G218875
TU296191 other downstream 680729 10523438 ~ 10526204 (+) False dcaf11
XR_005637949.1 other downstream 926666 10769375 ~ 10815975 (+) False zgc:101569

Expression Profile