RNA id: TU296187


Basic Information

Item Value
RNA id TU296187
length 615
lncRNA type inter_gene
GC content 0.51
exon number 4
gene id G218872
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 10472123 ~ 10473613 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCAGCAGTAAATGTTTATTCCACAAACTGATACACTATGCAGAGGTGGTGGGGAATTTTGTACTGCAGCACAACTGACTTATTGGTAACAAAATTGGCTAAACTCTGAAGTATAAACTAAAATGACGGCTGTGGGTAAGAAATCCTCTTCATGTCATTTGGTCTTCTAACATCATTGGACACGTGTTTCAGGTCTTCTTATCTGTGCTTCTTAAAGGCTCTTCTTTTCGTTTTCTTCTTCATgagtttcttctttttcttgggGCGAGAACTATCCCCATCCTGGCCCCCCTCGCCGCCTGTCAGTGCTGTGATGTCACTGAAGTGTGTGATGCCGCTCAGCTGGCCGGTCATGGACATCGCGCCTCTCTTTCTGGCATTCTTCTGCCGTTGCGGCATGTTGAGACGCACCATCATGGACTCTTCGTAATTTTTCCTGTGCAGCTCCTCGCGGCTCTCCCGATCGCTCTGGAAGTCCCGTCTGTCCCGGATCTCCTCCGGAGCGTCGCTGTACTGCTGTCTCAGCTCCTGGATCACAGAGCTTCTGAGGGCAGCTCGCCGCTGGCGCTCCGACTGAGCCTTCTTCTTGTCCGCTTCTGTCATGTCACCGTCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU296136 lncRNA downstream 168718 10303202 ~ 10303405 (-) True G218830
TU296126 lncRNA downstream 258515 10213345 ~ 10213608 (-) True G218822
TU296112 lncRNA downstream 393319 10014749 ~ 10078804 (-) True G218811
TU296105 lncRNA downstream 524613 9947287 ~ 9947510 (-) True G218807
TU296063 lncRNA downstream 628614 9833462 ~ 9843509 (-) False cngb3.1
TU296291 lncRNA upstream 124095 10597708 ~ 10598808 (-) True G218940
TU296292 lncRNA upstream 130722 10604335 ~ 10606687 (-) False LOC120552013
TU296314 lncRNA upstream 159674 10633287 ~ 10664783 (-) True G218951
XR_005637955.1 lncRNA upstream 184852 10658465 ~ 10661726 (-) True LOC120552022
TU296359 lncRNA upstream 241472 10715085 ~ 10716899 (-) True G218986
XM_039789778.1 mRNA downstream 3992 10464685 ~ 10468131 (-) True cebp1
XM_039789772.1 mRNA downstream 11987 10444586 ~ 10460136 (-) False slc22a17
XM_039789771.1 mRNA downstream 11992 10442565 ~ 10460131 (-) True slc22a17
XM_039790510.1 mRNA downstream 38648 10417943 ~ 10433475 (-) True LOC120552427
XM_039790231.1 mRNA downstream 72871 10344335 ~ 10399252 (-) True LOC120552310
XM_039789775.1 mRNA upstream 852 10474465 ~ 10494984 (-) True pabpn1
XM_039789777.1 mRNA upstream 852 10474465 ~ 10494216 (-) False pabpn1
XM_039789776.1 mRNA upstream 2585 10476198 ~ 10494982 (-) False pabpn1
XM_039789779.1 mRNA upstream 21742 10495355 ~ 10515206 (-) False zfhx2
XM_039789783.1 mRNA upstream 21742 10495355 ~ 10508941 (-) False zfhx2
TU295702 other downstream 2041193 8430464 ~ 8430930 (-) True G218471
TU295672 other downstream 2276244 8194929 ~ 8195879 (-) True G218453
unassigned_transcript_1411 other downstream 3130228 7341824 ~ 7341895 (-) True trnaw-cca_34
unassigned_transcript_1410 other downstream 3169356 7302696 ~ 7302767 (-) True trnaw-cca_33
unassigned_transcript_1409 other downstream 3170983 7301069 ~ 7301140 (-) True trnaw-cca_32
TU296313 other upstream 103786 10577399 ~ 10669527 (-) True G218950
TU296891 other upstream 2716040 13189653 ~ 13194041 (-) False bmi1a
XR_005637977.1 other upstream 3214808 13688421 ~ 13696741 (-) True pdk3a
XR_005637996.1 other upstream 3351180 13824793 ~ 13940381 (-) False sema5a
TU297468 other upstream 4572535 15046148 ~ 15048663 (-) False xkr9

Expression Profile